Fish Pangenome Project

CyPanBase

The Cyprinus carpio Pan-genome Database

Genome Browser Data

Cyprinus carpio (common carp) is one of the oldest domesticated freshwater fish. Traditional single reference genomes fail to capture the species’ rich genetic diversity arising from whole-genome duplication and extensive population diversification.

CyPanBase presents the first pan-genome of common carp, built from 500 Gb of resequencing data across 38 individuals. This platform integrates core/variable gene sets, PAVs, and functional annotations to accelerate molecular breeding.

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Total Sequences
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Gene Annotations
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Functional Records
Explore Data
Global Map
Geographic distribution of Cyprinus carpio accessions used for pan-genome construction.
Workflow
Workflow for construction and analysis of the Cyprinus carpio pan-genome.

Comparative Analysis

Heatmap
Hierarchical clustering of gene presence/absence variation in the Cyprinus carpio pan-genome.