CyPanBase

The Cyprinus carpio Pan-genome Database

Pan-genome Non-reference Annotations JBrowse
Genome Browser Data
About the database

CyPanBase is the first comprehensive pan-genome database for Cyprinus carpio, developed using over 500 Gb of whole-genome resequencing data from 38 genetically diverse accessions. The platform integrates pan-genome assemblies, non-reference genomic sequences, gene presence-absence variation (PAV), functional annotations, accession metadata, and an interactive JBrowse genome browser.

CyPanBase enables researchers to search genes, explore genomic variation, visualize reference and non-reference genomic regions, and download curated datasets for comparative genomics, evolutionary studies, and molecular breeding.

Pan-genome at a Glance

Key analyses and visualizations from the CyPanBase project — click any panel to enlarge.

Global Distribution
Global Distribution

Geographic distribution of Cyprinus carpio accessions used for pan-genome construction.

Methodology
Methodology

Workflow for construction and analysis of the Cyprinus carpio pan-genome.

Gene Distribution
Gene Distribution

Annotation coverage and BLAST hits against the NR database.

BUSCO Completeness
BUSCO Completeness

Assembly quality assessment showing high completeness.

GO: Biological Process
GO: Biological Process

Gene distribution across metabolic and physiological pathways.

GO: Molecular Function
GO: Molecular Function

Classification based on binding and catalytic activities.

GO: Cellular Component
GO: Cellular Component

Localization of gene products in cell parts and organelles.