Gene Function: Cell Signaling

Functional and statistical data for significant genes

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GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR924338_primary_scf7180002487398_1-1316
Len: 1,315 bp
Hits: 20
E-val: 3.20E-51
Sim: 75.78%
 XP_018943026.1 glypican-1-like, partial
GO:0016477P:cell migration
GO:0040037P:negative regulation of fibroblast growth factor receptor signaling pathway
GO:1905475P:regulation of protein localization to membrane
GO:0017134F:fibroblast growth factor binding
GO:0009986C:cell surface
GO:0016020C:membrane
GO:0045202C:synapse
Cell Signaling
SRR924338_primary_scf7180002487836_249-1032
Len: 783 bp
Hits: 20
E-val: 6.40E-31
Sim: 99.73%
 XP_026143244.1multiple epidermal growth factor-like domains protein 11 isoform X3
GO:0007157P:heterophilic cell-cell adhesion
GO:0016192P:vesicle-mediated transport
GO:0005044F:scavenger receptor activity
GO:0008270F:zinc ion binding
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002489102_139-801
Len: 662 bp
Hits: 20
E-val: 7.50E-33
Sim: 98.84%
 ROL51285.1Cytoplasmic dynein 1 heavy chain 1
GO:0007018P:microtubule-based movement
GO:0022010P:central nervous system myelination
GO:0050865P:regulation of cell activation
GO:0060219P:camera-type eye photoreceptor cell differentiation
GO:0070507P:regulation of microtubule cytoskeleton organization
GO:0005524F:ATP binding
GO:0008569F:minus-end-directed microtubule motor activity
GO:0016887F:ATP hydrolysis activity
GO:0045505F:dynein intermediate chain binding
GO:0051959F:dynein light intermediate chain binding
GO:0005858C:axonemal dynein complex
GO:0005874C:microtubule
Cell Signaling
SRR924338_primary_scf7180002490432_1-455
Len: 454 bp
Hits: 20
E-val: 1.50E-40
Sim: 97.78%
 XP_018922669.1 vang-like protein 2
GO:0000132P:establishment of mitotic spindle orientation
GO:0001736P:establishment of planar polarity
GO:0001839P:neural plate morphogenesis
GO:0001841P:neural tube formation
GO:0007015P:actin filament organization
GO:0014812P:muscle cell migration
GO:0021535P:cell migration in hindbrain
GO:0030198P:extracellular matrix organization
GO:0033564P:anterior/posterior axon guidance
GO:0035844P:cloaca development
GO:0035845P:photoreceptor cell outer segment organization
GO:0036342P:post-anal tail morphogenesis
GO:0045813P:positive regulation of Wnt signaling pathway, calcium modulating pathway
GO:0048048P:embryonic eye morphogenesis
GO:0048570P:notochord morphogenesis
GO:0048840P:otolith development
GO:0048884P:neuromast development
GO:0055002P:striated muscle cell development
GO:0060028P:convergent extension involved in axis elongation
GO:0060030P:dorsal convergence
GO:0060071P:Wnt signaling pathway, planar cell polarity pathway
GO:0060271P:cilium assembly
GO:0060971P:embryonic heart tube left/right pattern formation
GO:0071679P:commissural neuron axon guidance
GO:0090090P:negative regulation of canonical Wnt signaling pathway
GO:0097475P:motor neuron migration
GO:0005515F:protein binding
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002491787_1-1026
Len: 1,025 bp
Hits: 20
E-val: 2.20E-31
Sim: 97.29%
 ABA54943.1truncated thyroid receptor alpha
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0002154P:thyroid hormone receptor signaling pathway
GO:0030154P:cell differentiation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0048384P:retinoic acid receptor signaling pathway
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0004879F:nuclear receptor activity
GO:0008270F:zinc ion binding
GO:0090575C:RNA polymerase II transcription regulator complex
Cell Signaling
SRR924338_primary_scf7180002492736_495-977
Len: 482 bp
Hits: 20
E-val: 2.40E-60
Sim: 99.13%
 XP_018953061.1 rhodopsin-like
GO:0007186P:G protein-coupled receptor signaling pathway
GO:0007601P:visual perception
GO:0007602P:phototransduction
GO:0004930F:G protein-coupled receptor activity
GO:0009881F:photoreceptor activity
GO:0046872F:metal ion binding
GO:0016020C:membrane
Cell Signaling
SRR924338_primary_scf7180002494250_1-979
Len: 978 bp
Hits: 20
E-val: 2.80E-28
Sim: 100%
 XP_026138492.1E3 ubiquitin-protein ligase mib1 isoform X6
GO:0006897P:endocytosis
GO:0007219P:Notch signaling pathway
GO:0016567P:protein ubiquitination
GO:0004842F:ubiquitin-protein transferase activity
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0005737C:cytoplasm
Cell Signaling
SRR924338_primary_scf7180002494728_1-773
Len: 772 bp
Hits: 20
E-val: 1.10E-32
Sim: 99.78%
 XP_026143131.1inositol 1,4,5-trisphosphate receptor type 2
GO:0019722P:calcium-mediated signaling
GO:0051209P:release of sequestered calcium ion into cytosol
GO:0005220F:inositol 1,4,5-trisphosphate-gated calcium channel activity
GO:0070679F:inositol 1,4,5 trisphosphate binding
GO:0005789C:endoplasmic reticulum membrane
GO:0030658C:transport vesicle membrane
Cell Signaling
SRR924338_primary_scf7180002500605_1-1125
Len: 1,124 bp
Hits: 20
E-val: 1.20E-19
Sim: 89.35%
 XP_018922030.1 LOW QUALITY PROTEIN: laminin subunit alpha-5-like
GO:0007411P:axon guidance
GO:0008104P:intracellular protein localization
GO:0009887P:animal organ morphogenesis
GO:0009888P:tissue development
GO:0030155P:regulation of cell adhesion
GO:0030334P:regulation of cell migration
GO:0035138P:pectoral fin morphogenesis
GO:0035141P:medial fin morphogenesis
GO:0045892P:negative regulation of DNA-templated transcription
GO:0045995P:regulation of embryonic development
GO:0098609P:cell-cell adhesion
GO:0003714F:transcription corepressor activity
GO:0005102F:signaling receptor binding
GO:0005201F:extracellular matrix structural constituent
GO:0008017F:microtubule binding
GO:0008270F:zinc ion binding
GO:0005576C:extracellular region
GO:0005604C:basement membrane
GO:0005634C:nucleus
GO:0005737C:cytoplasm
GO:0005874C:microtubule
Cell Signaling
SRR924338_primary_scf7180002502135_1-1041
Len: 1,040 bp
Hits: 20
E-val: 1.20E-29
Sim: 91.2%
 XP_026055953.1nuclear receptor subfamily 1 group D member 1-like
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0009755P:hormone-mediated signaling pathway
GO:0030154P:cell differentiation
GO:0030522P:intracellular receptor signaling pathway
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0004879F:nuclear receptor activity
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Cell Signaling
SRR924338_primary_scf7180002517327_1-2413
Len: 2,412 bp
Hits: 20
E-val: 5.70E-38
Sim: 96.12%
 XP_018952544.1 catenin alpha-1-like
GO:0001541P:ovarian follicle development
GO:0001894P:tissue homeostasis
GO:0007163P:establishment or maintenance of cell polarity
GO:0007406P:negative regulation of neuroblast proliferation
GO:0008584P:male gonad development
GO:0016264P:gap junction assembly
GO:0016477P:cell migration
GO:0031103P:axon regeneration
GO:0034334P:adherens junction maintenance
GO:0042475P:odontogenesis of dentin-containing tooth
GO:0043009P:chordate embryonic development
GO:0043297P:apical junction assembly
GO:0043627P:response to estrogen
GO:0045880P:positive regulation of smoothened signaling pathway
GO:0071681P:cellular response to indole-3-methanol
GO:0090136P:epithelial cell-cell adhesion
GO:1900181P:negative regulation of protein localization to nucleus
GO:2000146P:negative regulation of cell motility
GO:2001045P:negative regulation of integrin-mediated signaling pathway
GO:2001240P:negative regulation of extrinsic apoptotic signaling pathway in absence of ligand
GO:2001241P:positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
GO:0005198F:structural molecule activity
GO:0008013F:beta-catenin binding
GO:0017166F:vinculin binding
GO:0042802F:identical protein binding
GO:0045295F:gamma-catenin binding
GO:0045296F:cadherin binding
GO:0051015F:actin filament binding
GO:0001669C:acrosomal vesicle
GO:0005634C:nucleus
GO:0005794C:Golgi apparatus
GO:0005902C:microvillus
GO:0005915C:zonula adherens
GO:0005938C:cell cortex
GO:0014704C:intercalated disc
GO:0015629C:actin cytoskeleton
GO:0016342C:catenin complex
GO:0016600C:flotillin complex
GO:0030027C:lamellipodium
Cell Signaling
SRR924338_primary_scf7180002517332_281-1021
Len: 740 bp
Hits: 20
E-val: 1.40E-125
Sim: 92.98%
 XP_016130532.1 whirlin-like
GO:0007605P:sensory perception of sound
GO:0060088P:auditory receptor cell stereocilium organization
GO:0001917C:photoreceptor inner segment
GO:0002142C:stereocilia ankle link complex
GO:0005886C:plasma membrane
GO:0005929C:cilium
GO:0032426C:stereocilium tip
Cell Signaling
SRR924338_primary_scf7180002517453_1-711
Len: 710 bp
Hits: 20
E-val: 1.20E-47
Sim: 98.4%
 RXN17338.1sonic hedgehog
GO:0001756P:somitogenesis
GO:0001839P:neural plate morphogenesis
GO:0001947P:heart looping
GO:0007267P:cell-cell signaling
GO:0007411P:axon guidance
GO:0008015P:blood circulation
GO:0008285P:negative regulation of cell population proliferation
GO:0009953P:dorsal/ventral pattern formation
GO:0010002P:cardioblast differentiation
GO:0010468P:regulation of gene expression
GO:0016539P:intein-mediated protein splicing
GO:0016540P:protein autoprocessing
GO:0021508P:floor plate formation
GO:0021520P:spinal cord motor neuron cell fate specification
GO:0021984P:adenohypophysis development
GO:0021986P:habenula development
GO:0030510P:regulation of BMP signaling pathway
GO:0030902P:hindbrain development
GO:0030917P:midbrain-hindbrain boundary development
GO:0030947P:regulation of vascular endothelial growth factor receptor signaling pathway
GO:0031018P:endocrine pancreas development
GO:0031076P:embryonic camera-type eye development
GO:0032835P:glomerulus development
GO:0033339P:pectoral fin development
GO:0035143P:caudal fin morphogenesis
GO:0042462P:eye photoreceptor cell development
GO:0042476P:odontogenesis
GO:0042694P:muscle cell fate specification
GO:0045494P:photoreceptor cell maintenance
GO:0045880P:positive regulation of smoothened signaling pathway
GO:0048557P:embryonic digestive tract morphogenesis
GO:0048618P:post-embryonic foregut morphogenesis
GO:0048702P:embryonic neurocranium morphogenesis
GO:0048703P:embryonic viscerocranium morphogenesis
GO:0048709P:oligodendrocyte differentiation
GO:0048741P:skeletal muscle fiber development
GO:0048793P:pronephros development
GO:0048795P:swim bladder morphogenesis
GO:0048839P:inner ear development
GO:0060956P:endocardial cell differentiation
GO:0061035P:regulation of cartilage development
GO:0070444P:oligodendrocyte progenitor proliferation
GO:0097264P:self proteolysis
GO:1905178P:regulation of cardiac muscle tissue regeneration
GO:0005113F:patched binding
GO:0005509F:calcium ion binding
GO:0008233F:peptidase activity
GO:0140853F:cholesterol-protein transferase activity
GO:0000139C:Golgi membrane
GO:0005615C:extracellular space
GO:0005789C:endoplasmic reticulum membrane
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002517475_1-1802
Len: 1,801 bp
Hits: 20
E-val: 3.50E-32
Sim: 66.91%
 XP_016335933.1 limbic system-associated membrane protein-like, partial
GO:0007156P:homophilic cell-cell adhesion
GO:0007411P:axon guidance
GO:0050808P:synapse organization
GO:0008046F:axon guidance receptor activity
GO:0005886C:plasma membrane
GO:0030424C:axon
GO:0043025C:neuronal cell body
Cell Signaling
SRR924338_primary_scf7180002517821_1-1486
Len: 1,485 bp
Hits: 20
E-val: 5.40E-164
Sim: 99.14%
 XP_016136240.1 melatonin receptor type 1A-A
GO:0007186P:G protein-coupled receptor signaling pathway
GO:0048511P:rhythmic process
GO:0008502F:melatonin receptor activity
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002517845_1-1572
Len: 1,571 bp
Hits: 20
E-val: 8.30E-30
Sim: 95.62%
 RXN24263.1glutamate receptor 4 isoform X3
GO:0008347P:glial cell migration
GO:0034220P:monoatomic ion transmembrane transport
GO:0035235P:ionotropic glutamate receptor signaling pathway
GO:0035249P:synaptic transmission, glutamatergic
GO:0050804P:modulation of chemical synaptic transmission
GO:0060078P:regulation of postsynaptic membrane potential
GO:0004971F:AMPA glutamate receptor activity
GO:1904315F:transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential
GO:0032281C:AMPA glutamate receptor complex
GO:0043025C:neuronal cell body
GO:0043197C:dendritic spine
GO:0098839C:postsynaptic density membrane
Cell Signaling
SRR924338_primary_scf7180002518035_320-1243
Len: 923 bp
Hits: 20
E-val: 6.50E-168
Sim: 88.61%
 XP_018930233.1 G-protein coupled receptor 55-like
GO:0007200P:phospholipase C-activating G protein-coupled receptor signaling pathway
GO:0035025P:positive regulation of Rho protein signal transduction
GO:0004930F:G protein-coupled receptor activity
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002518188_908-1330
Len: 422 bp
Hits: 20
E-val: 8.10E-73
Sim: 94.75%
 XP_018974417.1 thyrotropin-releasing hormone receptor-like
GO:0007200P:phospholipase C-activating G protein-coupled receptor signaling pathway
GO:0004997F:thyrotropin-releasing hormone receptor activity
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002518281_86-1101
Len: 1,015 bp
Hits: 20
E-val: 4.20E-35
Sim: 71.55%
 XP_026104105.1adenylate cyclase type 2-like
GO:0007188P:adenylate cyclase-modulating G protein-coupled receptor signaling pathway
GO:0009190P:cyclic nucleotide biosynthetic process
GO:0016849F:phosphorus-oxygen lyase activity
GO:0043167F:ion binding
GO:0016020C:membrane
Cell Signaling
SRR924338_primary_scf7180002518292_287-1588
Len: 1,301 bp
Hits: 20
E-val: 6.70E-243
Sim: 94.15%
 XP_018933081.1 probable G-protein coupled receptor 101
GO:0021854P:hypothalamus development
GO:0043410P:positive regulation of MAPK cascade
GO:0045995P:regulation of embryonic development
GO:0071880P:adenylate cyclase-activating adrenergic receptor signaling pathway
GO:0004930F:G protein-coupled receptor activity
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002518669_457-1394
Len: 937 bp
Hits: 20
E-val: 8.50E-22
Sim: 94.77%
 XP_026128475.1integrin alpha-6-like isoform X2
GO:0007160P:cell-matrix adhesion
GO:0007229P:integrin-mediated signaling pathway
GO:0007519P:skeletal muscle tissue development
GO:0033627P:cell adhesion mediated by integrin
GO:0050900P:leukocyte migration
GO:0098609P:cell-cell adhesion
GO:0005178F:integrin binding
GO:0008305C:integrin complex
GO:0009897C:external side of plasma membrane
Cell Signaling
SRR924338_primary_scf7180002519124_1-1794
Len: 1,793 bp
Hits: 20
E-val: 6.90E-105
Sim: 88.98%
 XP_018965001.1 metalloprotease TIKI1-like
GO:0006508P:proteolysis
GO:0030178P:negative regulation of Wnt signaling pathway
GO:0004222F:metalloendopeptidase activity
GO:0046872F:metal ion binding
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002519441_1-1331
Len: 1,330 bp
Hits: 20
E-val: 7.00E-30
Sim: 99.81%
 XP_018943628.1 metabotropic glutamate receptor 4-like
GO:0007196P:adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway
GO:0051966P:regulation of synaptic transmission, glutamatergic
GO:0001640F:adenylate cyclase inhibiting G protein-coupled glutamate receptor activity
GO:0005886C:plasma membrane
Cell Signaling
SRR924338_primary_scf7180002519813_1-2005
Len: 2,004 bp
Hits: 20
E-val: 0
Sim: 94.61%
 XP_018970970.1 NF-kappa-B-repressing factor-like
GO:0002031P:G protein-coupled receptor internalization
GO:0007399P:nervous system development
GO:0007601P:visual perception
GO:0001664F:G protein-coupled receptor binding
GO:0003676F:nucleic acid binding
GO:0005654C:nucleoplasm
GO:0005730C:nucleolus
Cell Signaling
SRR924338_primary_scf7180002520832_1-1240
Len: 1,239 bp
Hits: 20
E-val: 7.30E-29
Sim: 92.82%
 XP_016351875.1 hemicentin-1-like
GO:0007156P:homophilic cell-cell adhesion
GO:0007411P:axon guidance
GO:0033334P:fin morphogenesis
GO:0050808P:synapse organization
GO:0071711P:basement membrane organization
GO:0005509F:calcium ion binding
GO:0008046F:axon guidance receptor activity
GO:0005576C:extracellular region
GO:0005886C:plasma membrane
GO:0030424C:axon
GO:0043025C:neuronal cell body
Cell Signaling