Gene Function: DNA Metabolism

Functional and statistical data for significant genes

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Showing 1,023 results (Page 5 of 41)
GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR924327_primary_scf7180002754125_1-189
Len: 188 bp
Hits: 20
E-val: 8.90E-24
Sim: 100%
 XP_027015557.1histone H2A
GO:0031507P:heterochromatin formation
GO:0045087P:innate immune response
GO:0050830P:defense response to Gram-positive bacterium
GO:0051673P:disruption of plasma membrane integrity in another organism
GO:0003677F:DNA binding
GO:0030527F:structural constituent of chromatin
GO:0046982F:protein heterodimerization activity
GO:0000786C:nucleosome
GO:0005615C:extracellular space
GO:0005634C:nucleus
DNA Metabolism
SRR924330_primary_scf7180002815892_1109-1635
Len: 526 bp
Hits: 20
E-val: 1.80E-45
Sim: 83.25%
 RXN30179.1myb SANT-like DNA-binding domain-containing 4
GO:0003677F:DNA binding
GO:0005634C:nucleus
DNA Metabolism
SRR924330_primary_scf7180002815892_1834-3246
Len: 1,412 bp
Hits: 20
E-val: 1.80E-132
Sim: 94.76%
 XP_018952496.1 putative nuclease HARBI1 isoform X1
GO:0004518F:nuclease activity
GO:0046872F:metal ion binding
GO:0005634C:nucleus
GO:0005737C:cytoplasm
GO:0016020C:membrane
DNA Metabolism
SRR924330_primary_scf7180002815898_624-3116
Len: 2,492 bp
Hits: 20
E-val: 0
Sim: 73.38%
 ROI84226.1Transposon Tf2-9 polyprotein
GO:0006278P:RNA-templated DNA biosynthetic process
GO:0015074P:DNA integration
GO:0003676F:nucleic acid binding
GO:0003964F:RNA-directed DNA polymerase activity
GO:0004519F:endonuclease activity
DNA Metabolism
SRR924330_primary_scf7180002815937_360-3834
Len: 3,474 bp
Hits: 20
E-val: 0
Sim: 66.4%
 RXN26735.1Transposon Ty3-G Gag-Pol poly
GO:0015074P:DNA integration
GO:0003676F:nucleic acid binding
DNA Metabolism
SRR924330_primary_scf7180002816205_1-2280
Len: 2,279 bp
Hits: 20
E-val: 5.00E-209
Sim: 65.1%
 RXN08554.1RNA-directed DNA polymerase from mobile element jockey-like protein
GO:0071897P:DNA biosynthetic process
GO:0003824F:catalytic activity
DNA Metabolism
SRR924330_primary_scf7180002816967_536-1525
Len: 989 bp
Hits: 20
E-val: 6.80E-155
Sim: 68.18%
 RXN07122.1gypsy-16 si
GO:0015074P:DNA integration
GO:0003676F:nucleic acid binding
GO:0003824F:catalytic activity
DNA Metabolism
SRR924330_primary_scf7180002822294_1-892
Len: 891 bp
Hits: 20
E-val: 1.30E-101
Sim: 89.41%
 XP_026089718.1zinc finger BED domain-containing protein 1-like
GO:0003677F:DNA binding
GO:0008270F:zinc ion binding
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
DNA Metabolism
SRR924330_primary_scf7180002832198_1-912
Len: 911 bp
Hits: 20
E-val: 7.10E-50
Sim: 76.96%
 ROL51806.1RING finger protein 145
GO:0036503P:ERAD pathway
GO:0043161P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0008270F:zinc ion binding
GO:0061630F:ubiquitin protein ligase activity
GO:0012505C:endomembrane system
GO:0016020C:membrane
DNA Metabolism
SRR924330_primary_scf7180002832228_1-1090
Len: 1,089 bp
Hits: 20
E-val: 6.60E-34
Sim: 66.66%
 XP_016419922.1 E3 ubiquitin-protein ligase RBBP6-like, partial
GO:0006397P:mRNA processing
GO:0006511P:ubiquitin-dependent protein catabolic process
GO:0016567P:protein ubiquitination
GO:0008270F:zinc ion binding
GO:0061630F:ubiquitin protein ligase activity
GO:0005634C:nucleus
DNA Metabolism
SRR924330_primary_scf7180002832264_214-1402
Len: 1,188 bp
Hits: 20
E-val: 5.90E-36
Sim: 66.41%
 XP_016133459.1 replication factor C subunit 3-like, partial
GO:0006260P:DNA replication
GO:0003824F:catalytic activity
GO:0140657F:ATP-dependent activity
GO:0043229C:intracellular organelle
DNA Metabolism
SRR924330_primary_scf7180002837959_1-777
Len: 776 bp
Hits: 20
E-val: 2.90E-15
Sim: 98.5%
 RXN18393.1U5 small nuclear ribonucleo protein 200 kDa helicase
GO:0000712P:resolution of meiotic recombination intermediates
GO:0006397P:mRNA processing
GO:0007399P:nervous system development
GO:0003676F:nucleic acid binding
GO:0003678F:DNA helicase activity
GO:0005524F:ATP binding
GO:0016887F:ATP hydrolysis activity
GO:0005634C:nucleus
GO:1990904C:ribonucleoprotein complex
DNA Metabolism
SRR924330_primary_scf7180002840278_196-1023
Len: 827 bp
Hits: 20
E-val: 7.20E-25
Sim: 98.33%
 XP_016137063.1 protein SMG5-like
GO:0000184P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0043009P:chordate embryonic development
GO:0042162F:telomeric DNA binding
GO:0070034F:telomerase RNA binding
GO:0005697C:telomerase holoenzyme complex
GO:0005737C:cytoplasm
DNA Metabolism
SRR924330_primary_scf7180002856066_216-1368
Len: 1,152 bp
Hits: 20
E-val: 2.60E-105
Sim: 89.73%
 XP_018978867.1 E3 ubiquitin-protein ligase Mdm2 isoform X1
GO:0010468P:regulation of gene expression
GO:0016567P:protein ubiquitination
GO:0043066P:negative regulation of apoptotic process
GO:0051726P:regulation of cell cycle
GO:0065008P:regulation of biological quality
GO:0002039F:p53 binding
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0042802F:identical protein binding
GO:0061630F:ubiquitin protein ligase activity
GO:0005654C:nucleoplasm
GO:0005730C:nucleolus
GO:0005737C:cytoplasm
DNA Metabolism
SRR924330_primary_scf7180002856786_86-739
Len: 653 bp
Hits: 20
E-val: 2.80E-125
Sim: 89.88%
 XP_018980001.1 mitochondrial ubiquitin ligase activator of nfkb 1-A-like
GO:0000266P:mitochondrial fission
GO:0016567P:protein ubiquitination
GO:0043123P:positive regulation of canonical NF-kappaB signal transduction
GO:0051646P:mitochondrion localization
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0042802F:identical protein binding
GO:0061630F:ubiquitin protein ligase activity
GO:0005741C:mitochondrial outer membrane
GO:0005777C:peroxisome
DNA Metabolism
SRR924330_primary_scf7180002858153_1-845
Len: 844 bp
Hits: 20
E-val: 8.10E-32
Sim: 86.25%
 RXN31665.1MMS22-like protein
GO:0000724P:double-strand break repair via homologous recombination
GO:0006325P:chromatin organization
GO:0031297P:replication fork processing
GO:0003697F:single-stranded DNA binding
GO:0035101C:FACT complex
GO:0042555C:MCM complex
GO:0043596C:nuclear replication fork
GO:0090734C:site of DNA damage
DNA Metabolism
SRR924330_primary_scf7180002861763_234-1186
Len: 952 bp
Hits: 20
E-val: 1.80E-35
Sim: 91.15%
 XP_018941099.1 probable E3 ubiquitin-protein ligase HERC4
GO:0006511P:ubiquitin-dependent protein catabolic process
GO:0016567P:protein ubiquitination
GO:0016874F:ligase activity
GO:0061630F:ubiquitin protein ligase activity
GO:0005737C:cytoplasm
DNA Metabolism
SRR924330_primary_scf7180002921192_1-569
Len: 568 bp
Hits: 20
E-val: 2.00E-21
Sim: 97.41%
 CDQ61588.1unnamed protein product
GO:0000209P:protein polyubiquitination
GO:0016874F:ligase activity
GO:0061630F:ubiquitin protein ligase activity
DNA Metabolism
SRR924330_primary_scf7180002925107_1-761
Len: 760 bp
Hits: 20
E-val: 5.40E-136
Sim: 96.7%
 XP_018975754.1 LOW QUALITY PROTEIN: endoribonuclease Dicer-like
GO:0006309P:apoptotic DNA fragmentation
GO:0014032P:neural crest cell development
GO:0021591P:ventricular system development
GO:0030318P:melanocyte differentiation
GO:0030422P:siRNA processing
GO:0031054P:pre-miRNA processing
GO:0031507P:heterochromatin formation
GO:0035279P:miRNA-mediated gene silencing by mRNA destabilization
GO:0050767P:regulation of neurogenesis
GO:0098795P:global gene silencing by mRNA cleavage
GO:1904888P:cranial skeletal system development
GO:0003677F:DNA binding
GO:0004386F:helicase activity
GO:0004525F:ribonuclease III activity
GO:0004530F:deoxyribonuclease I activity
GO:0005515F:protein binding
GO:0005524F:ATP binding
GO:0046872F:metal ion binding
GO:0070883F:pre-miRNA binding
GO:0005634C:nucleus
GO:0005737C:cytoplasm
GO:0016442C:RISC complex
GO:0070578C:RISC-loading complex
DNA Metabolism
SRR924330_primary_scf7180002926038_451-1062
Len: 611 bp
Hits: 20
E-val: 9.90E-72
Sim: 70.17%
 XP_026145002.1chromodomain-helicase-DNA-binding protein 4-like isoform X2
GO:0006338P:chromatin remodeling
GO:0031101P:fin regeneration
GO:0003677F:DNA binding
GO:0003678F:DNA helicase activity
GO:0003682F:chromatin binding
GO:0016887F:ATP hydrolysis activity
GO:0042393F:histone binding
GO:0043167F:ion binding
GO:0140658F:ATP-dependent chromatin remodeler activity
GO:0016581C:NuRD complex
DNA Metabolism
SRR924330_primary_scf7180003103161_753-1130
Len: 377 bp
Hits: 20
E-val: 1.60E-59
Sim: 98.7%
 XP_016323705.1 WD repeat-containing protein 13-like
GO:1990841F:promoter-specific chromatin binding
GO:0005634C:nucleus
GO:0016020C:membrane
DNA Metabolism
SRR924330_primary_scf7180003107667_252-801
Len: 549 bp
Hits: 20
E-val: 1.10E-48
Sim: 88.56%
 XP_018975611.1 F-box only protein 48-like
GO:0016567P:protein ubiquitination
GO:0031146P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0005737C:cytoplasm
GO:0019005C:SCF ubiquitin ligase complex
DNA Metabolism
SRR924332_primary_scf7180002782944_1-5214
Len: 5,213 bp
Hits: 20
E-val: 2.20E-292
Sim: 54.71%
 BAC82617.1pol-like protein
GO:0006278P:RNA-templated DNA biosynthetic process
GO:0003676F:nucleic acid binding
GO:0003824F:catalytic activity
GO:0003964F:RNA-directed DNA polymerase activity
GO:0008270F:zinc ion binding
DNA Metabolism
SRR924332_primary_scf7180002783234_399-1487
Len: 1,088 bp
Hits: 20
E-val: 9.10E-169
Sim: 83.41%
 XP_026120544.1protein ALP1-like
GO:0004518F:nuclease activity
GO:0046872F:metal ion binding
GO:0005634C:nucleus
GO:0016020C:membrane
DNA Metabolism
SRR924332_primary_scf7180002783337_564-3261
Len: 2,697 bp
Hits: 20
E-val: 0
Sim: 69.57%
 RXN26735.1Transposon Ty3-G Gag-Pol poly
GO:0015074P:DNA integration
GO:0003676F:nucleic acid binding
DNA Metabolism