Functional and statistical data for significant genes
| Sequence & Stats | Description | GO Annotations | Gene Function |
|---|---|---|---|
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SRR924338_primary_scf7180002493997_451-1023
Len: 572 bp
Hits: 20
E-val: 2.00E-98
Sim: 93.8%
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XP_018940656.1 homeobox protein Nkx-2.4-like |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0021854P:hypothalamus development GO:0030154P:cell differentiation GO:0030878P:thyroid gland development GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0001046F:core promoter sequence-specific DNA binding GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002494441_1-842
Len: 841 bp
Hits: 20
E-val: 1.60E-19
Sim: 95.51%
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XP_017537987.1 myelin transcription factor 1-like protein isoform X5 |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0007399P:nervous system development GO:0030154P:cell differentiation GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0008270F:zinc ion binding GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002495140_1-977
Len: 976 bp
Hits: 20
E-val: 1.60E-10
Sim: 90.08%
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CAG06116.1unnamed protein product |
GO:0045944P:positive regulation of transcription by RNA polymerase II GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0001228F:DNA-binding transcription activator activity, RNA polymerase II-specific GO:0008270F:zinc ion binding GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002496729_1-1287
Len: 1,286 bp
Hits: 20
E-val: 2.40E-168
Sim: 93.77%
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XP_018949202.1 E3 ubiquitin-protein ligase ZFP91-like |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0003712F:transcription coregulator activity GO:0008270F:zinc ion binding GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002496764_1-554
Len: 553 bp
Hits: 20
E-val: 3.70E-25
Sim: 98.9%
|
XP_026146201.1DNA (cytosine-5)-methyltransferase 3A-like isoform X1 |
GO:0032259P:methylation GO:0045892P:negative regulation of DNA-templated transcription GO:0008270F:zinc ion binding GO:0051719F:DNA (cytosine-5-)-methyltransferase activity, acting on CpN substrates GO:0051720F:DNA (cytosine-5-)-methyltransferase activity, acting on CpNpG substrates GO:0005634C:nucleus GO:0005737C:cytoplasm |
Transcription Regulation
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SRR924338_primary_scf7180002499572_391-1073
Len: 682 bp
Hits: 20
E-val: 7.30E-23
Sim: 100%
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XP_026130908.1period circadian protein homolog 3-like isoform X1 |
GO:0000122P:negative regulation of transcription by RNA polymerase II GO:0032922P:circadian regulation of gene expression GO:0043153P:entrainment of circadian clock by photoperiod GO:0000976F:transcription cis-regulatory region binding GO:0001222F:transcription corepressor binding GO:0005634C:nucleus GO:0005737C:cytoplasm |
Transcription Regulation
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SRR924338_primary_scf7180002516870_1-408
Len: 407 bp
Hits: 20
E-val: 6.20E-62
Sim: 89.43%
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XP_018965191.1 homeobox protein EMX1-like |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0021537P:telencephalon development GO:0021862P:early neuron differentiation in forebrain GO:0021952P:central nervous system projection neuron axonogenesis GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0005634C:nucleus GO:0016020C:membrane |
Transcription Regulation
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SRR924338_primary_scf7180002517162_1-1478
Len: 1,477 bp
Hits: 20
E-val: 6.00E-232
Sim: 95.35%
|
XP_018973512.1 zinc finger protein ZFAT-like isoform X1 |
GO:0045944P:positive regulation of transcription by RNA polymerase II GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0008270F:zinc ion binding GO:0043565F:sequence-specific DNA binding GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002517942_1-1797
Len: 1,796 bp
Hits: 20
E-val: 1.50E-128
Sim: 84.3%
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XP_016373401.1 AT-rich interactive domain-containing protein 1A-like isoform X1 |
GO:0006338P:chromatin remodeling GO:0006357P:regulation of transcription by RNA polymerase II GO:0045893P:positive regulation of DNA-templated transcription GO:0003677F:DNA binding GO:0031491F:nucleosome binding GO:0005654C:nucleoplasm GO:0016514C:SWI/SNF complex GO:0035060C:brahma complex GO:0071565C:nBAF complex |
Transcription Regulation
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SRR924338_primary_scf7180002518225_1-1016
Len: 1,015 bp
Hits: 20
E-val: 1.50E-16
Sim: 73.02%
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XP_016087859.1 storkhead-box protein 2-like isoform X2 |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding GO:0005634C:nucleus GO:0005737C:cytoplasm |
Transcription Regulation
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SRR924338_primary_scf7180002518586_312-1859
Len: 1,547 bp
Hits: 20
E-val: 6.40E-83
Sim: 86.37%
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XP_018958998.1 homeobox protein XHOX-3-like |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0009953P:dorsal/ventral pattern formation GO:0036342P:post-anal tail morphogenesis GO:0042661P:regulation of mesodermal cell fate specification GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002519053_183-884
Len: 701 bp
Hits: 20
E-val: 7.50E-132
Sim: 98.83%
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XP_018981000.1 homeobox protein SIX3-like |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0007420P:brain development GO:0021631P:optic nerve morphogenesis GO:0048596P:embryonic camera-type eye morphogenesis GO:0070654P:sensory epithelium regeneration GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0005634C:nucleus GO:0005667C:transcription regulator complex |
Transcription Regulation
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SRR924338_primary_scf7180002519063_1-1377
Len: 1,376 bp
Hits: 20
E-val: 3.90E-15
Sim: 100%
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XP_026105768.1PH-interacting protein-like isoform X2 |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0007010P:cytoskeleton organization GO:0008360P:regulation of cell shape GO:0031492F:nucleosomal DNA binding GO:0000785C:chromatin GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002519130_1-1005
Len: 1,004 bp
Hits: 20
E-val: 1.60E-167
Sim: 95.19%
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XP_018968507.1 zinc finger protein 438 isoform X1 |
GO:0045944P:positive regulation of transcription by RNA polymerase II GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0008270F:zinc ion binding GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002519640_1-892
Len: 891 bp
Hits: 20
E-val: 1.90E-135
Sim: 80.56%
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XP_018953927.1 LOW QUALITY PROTEIN: chromodomain Y-like protein |
GO:0045892P:negative regulation of DNA-templated transcription GO:0003714F:transcription corepressor activity GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002519941_233-1301
Len: 1,068 bp
Hits: 20
E-val: 7.70E-96
Sim: 93.43%
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XP_018980819.1 homeobox protein Hox-A9a-like |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0009952P:anterior/posterior pattern specification GO:0009954P:proximal/distal pattern formation GO:0048704P:embryonic skeletal system morphogenesis GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002520239_205-1888
Len: 1,683 bp
Hits: 20
E-val: 7.30E-48
Sim: 65.42%
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XP_026099488.1interleukin enhancer-binding factor 2 homolog |
GO:0045893P:positive regulation of DNA-templated transcription GO:0003677F:DNA binding GO:0003725F:double-stranded RNA binding GO:0005634C:nucleus GO:0071013C:catalytic step 2 spliceosome |
Transcription Regulation
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SRR924338_primary_scf7180002520316_1-1250
Len: 1,249 bp
Hits: 20
E-val: 1.20E-20
Sim: 99.37%
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XP_016090226.1 zinc finger E-box-binding homeobox 1-like isoform X4 |
GO:0000122P:negative regulation of transcription by RNA polymerase II GO:0007417P:central nervous system development GO:0010470P:regulation of gastrulation GO:0070587P:regulation of cell-cell adhesion involved in gastrulation GO:2000145P:regulation of cell motility GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0008270F:zinc ion binding GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002521165_538-1209
Len: 671 bp
Hits: 20
E-val: 1.80E-98
Sim: 86.01%
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XP_018970898.1 LOW QUALITY PROTEIN: homeobox protein cut-like 2 |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002521307_544-1232
Len: 688 bp
Hits: 20
E-val: 3.20E-26
Sim: 70.41%
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XP_022527628.1mediator of RNA polymerase II transcription subunit 12 |
GO:0001822P:kidney development GO:0002761P:regulation of myeloid leukocyte differentiation GO:0007492P:endoderm development GO:0007507P:heart development GO:0014032P:neural crest cell development GO:0021591P:ventricular system development GO:0021654P:rhombomere boundary formation GO:0021954P:central nervous system neuron development GO:0021982P:pineal gland development GO:0021986P:habenula development GO:0030901P:midbrain development GO:0035118P:embryonic pectoral fin morphogenesis GO:0043583P:ear development GO:0045944P:positive regulation of transcription by RNA polymerase II GO:0048702P:embryonic neurocranium morphogenesis GO:0048703P:embryonic viscerocranium morphogenesis GO:0050935P:iridophore differentiation GO:0003700F:DNA-binding transcription factor activity GO:0003713F:transcription coactivator activity GO:0140585F:promoter-enhancer loop anchoring activity GO:0016592C:mediator complex |
Transcription Regulation
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SRR924338_primary_scf7180002521552_1-1731
Len: 1,730 bp
Hits: 20
E-val: 5.00E-76
Sim: 58.34%
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XP_018966477.1 LOW QUALITY PROTEIN: BRCA2-interacting transcriptional repressor EMSY-like |
Transcription Regulation
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SRR924338_primary_scf7180002521584_1-846
Len: 845 bp
Hits: 20
E-val: 6.10E-88
Sim: 64.83%
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XP_018940771.1 nuclear receptor subfamily 1 group D member 1-like isoform X1 |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0007165P:signal transduction GO:0003700F:DNA-binding transcription factor activity GO:0043565F:sequence-specific DNA binding |
Transcription Regulation
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SRR924338_primary_scf7180002521877_1-849
Len: 848 bp
Hits: 20
E-val: 1.30E-45
Sim: 94.8%
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XP_018978435.1 LOW QUALITY PROTEIN: hepatocyte nuclear factor 1-alpha-like |
GO:0001889P:liver development GO:0003323P:type B pancreatic cell development GO:0006357P:regulation of transcription by RNA polymerase II GO:0030073P:insulin secretion GO:0045893P:positive regulation of DNA-templated transcription GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0046983F:protein dimerization activity GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002522591_528-1226
Len: 698 bp
Hits: 20
E-val: 6.10E-126
Sim: 91.07%
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XP_018955118.1 interferon regulatory factor 2-binding protein 2-A-like |
GO:0001889P:liver development GO:0006357P:regulation of transcription by RNA polymerase II GO:0030223P:neutrophil differentiation GO:0045892P:negative regulation of DNA-templated transcription GO:0003714F:transcription corepressor activity GO:0008270F:zinc ion binding GO:0005634C:nucleus |
Transcription Regulation
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SRR924338_primary_scf7180002522724_1-1420
Len: 1,419 bp
Hits: 18
E-val: 3.40E-06
Sim: 85.21%
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XP_017539651.1 actin-like protein 6B isoform X1 |
GO:0006338P:chromatin remodeling GO:0006357P:regulation of transcription by RNA polymerase II GO:0007399P:nervous system development GO:0003682F:chromatin binding GO:0016514C:SWI/SNF complex GO:0035267C:NuA4 histone acetyltransferase complex |
Transcription Regulation
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