Gene Function: Transcription Regulation

Functional and statistical data for significant genes

Download
Showing 1,388 results (Page 17 of 56)
GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR924681_primary_scf7180003524721_353-815
Len: 462 bp
Hits: 20
E-val: 2.10E-18
Sim: 96.43%
 XP_026056286.1E3 ubiquitin-protein ligase RNF6-like
GO:0006511P:ubiquitin-dependent protein catabolic process
GO:0016567P:protein ubiquitination
GO:0045893P:positive regulation of DNA-templated transcription
GO:0008270F:zinc ion binding
GO:0061630F:ubiquitin protein ligase activity
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003525171_239-678
Len: 439 bp
Hits: 20
E-val: 2.00E-26
Sim: 98.61%
 RXN20265.1general transcription factor IIH subunit 4
GO:0006289P:nucleotide-excision repair
GO:0006351P:DNA-templated transcription
GO:0035556P:intracellular signal transduction
GO:0001671F:ATPase activator activity
GO:0003690F:double-stranded DNA binding
GO:0003899F:DNA-directed RNA polymerase activity
GO:0005085F:guanyl-nucleotide exchange factor activity
GO:0008270F:zinc ion binding
GO:0017124F:SH3 domain binding
GO:0000439C:transcription factor TFIIH core complex
GO:0005675C:transcription factor TFIIH holo complex
GO:0005737C:cytoplasm
Transcription Regulation
SRR924681_primary_scf7180003533811_45-1045
Len: 1,000 bp
Hits: 20
E-val: 1.40E-22
Sim: 99.25%
 ROL45892.1SWI/SNF complex subunit SMARCC1
GO:0006325P:chromatin organization
GO:0045893P:positive regulation of DNA-templated transcription
GO:0048858P:cell projection morphogenesis
GO:0042393F:histone binding
GO:0016514C:SWI/SNF complex
GO:0045202C:synapse
GO:0071564C:npBAF complex
GO:0071565C:nBAF complex
Transcription Regulation
SRR924681_primary_scf7180003536532_1-568
Len: 567 bp
Hits: 20
E-val: 3.80E-25
Sim: 100%
 XP_026099727.1histone-lysine N-methyltransferase 2D-like isoform X6
GO:0006338P:chromatin remodeling
GO:0032259P:methylation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003713F:transcription coactivator activity
GO:0008270F:zinc ion binding
GO:0140999F:histone H3K4 trimethyltransferase activity
GO:0044666C:MLL3/4 complex
Transcription Regulation
SRR924681_primary_scf7180003537624_1-1533
Len: 1,532 bp
Hits: 20
E-val: 1.20E-206
Sim: 89.86%
 XP_018927572.1 LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETD1A-like
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0006508P:proteolysis
GO:0032259P:methylation
GO:0003723F:RNA binding
GO:0004252F:serine-type endopeptidase activity
GO:0008270F:zinc ion binding
GO:0032931F:histone H3K56 acetyltransferase activity
GO:0036408F:histone H3K14 acetyltransferase activity
GO:0042800F:histone H3K4 methyltransferase activity
GO:0043992F:histone H3K9 acetyltransferase activity
GO:0043993F:histone H3K18 acetyltransferase activity
GO:0043994F:histone H3K23 acetyltransferase activity
GO:0043995F:histone H4K5 acetyltransferase activity
GO:0043996F:histone H4K8 acetyltransferase activity
GO:0043997F:histone H4K12 acetyltransferase activity
GO:0043999F:histone H2AK5 acetyltransferase activity
GO:0044012F:histone H2AK9 acetyltransferase activity
GO:0044014F:histone H2BK5 acetyltransferase activity
GO:0044015F:histone H2BK12 acetyltransferase activity
GO:0044016F:histone H3K4 acetyltransferase activity
GO:0044017F:histone H3K27 acetyltransferase activity
GO:0044018F:histone H3K36 acetyltransferase activity
GO:0046972F:histone H4K16 acetyltransferase activity
GO:0140908F:histone H3K122 acetyltransferase activity
GO:0000775C:chromosome, centromeric region
GO:0048188C:Set1C/COMPASS complex
Transcription Regulation
SRR924681_primary_scf7180003537643_195-1400
Len: 1,205 bp
Hits: 20
E-val: 7.20E-82
Sim: 75.17%
 XP_016362652.1 TOX high mobility group box family member 4-A-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0031490F:chromatin DNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003537923_1-1808
Len: 1,807 bp
Hits: 20
E-val: 4.70E-69
Sim: 71.43%
 XP_026067620.1LIM homeobox transcription factor 1-alpha-like isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0030182P:neuron differentiation
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046872F:metal ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003538036_815-1777
Len: 962 bp
Hits: 20
E-val: 7.50E-66
Sim: 84.85%
 XP_018960114.1 LOW QUALITY PROTEIN: zinc fingers and homeoboxes protein 1-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677F:DNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003538295_1-1659
Len: 1,658 bp
Hits: 20
E-val: 5.70E-21
Sim: 99.34%
 CDQ99328.1unnamed protein product, partial
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677F:DNA binding
GO:0005634C:nucleus
GO:0016020C:membrane
Transcription Regulation
SRR924681_primary_scf7180003538614_1-1918
Len: 1,917 bp
Hits: 14
E-val: 4.00E-10
Sim: 85.71%
 XP_026067268.1protein SCAI-like isoform X3
GO:0045892P:negative regulation of DNA-templated transcription
GO:0003714F:transcription corepressor activity
Transcription Regulation
SRR924681_primary_scf7180003539266_1-1041
Len: 1,040 bp
Hits: 20
E-val: 4.60E-61
Sim: 67.58%
 XP_026125140.1DNA methyltransferase 1-associated protein 1-like
GO:0045892P:negative regulation of DNA-templated transcription
GO:0060041P:retina development in camera-type eye
GO:0000785C:chromatin
GO:0005634C:nucleus
GO:1902494C:catalytic complex
Transcription Regulation
SRR924681_primary_scf7180003539984_458-1653
Len: 1,195 bp
Hits: 20
E-val: 4.60E-105
Sim: 85.8%
 XP_018939101.1 actin-binding Rho-activating protein-like
GO:0007507P:heart development
GO:0008015P:blood circulation
GO:0035025P:positive regulation of Rho protein signal transduction
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003779F:actin binding
GO:0030017C:sarcomere
Transcription Regulation
SRR924681_primary_scf7180003540385_1-806
Len: 805 bp
Hits: 20
E-val: 2.10E-13
Sim: 87.7%
 XP_016427416.1 circadian locomoter output cycles protein kaput-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0006974P:DNA damage response
GO:0007498P:mesoderm development
GO:0009266P:response to temperature stimulus
GO:0009648P:photoperiodism
GO:0010628P:positive regulation of gene expression
GO:0032922P:circadian regulation of gene expression
GO:0045893P:positive regulation of DNA-templated transcription
GO:0060215P:primitive hemopoiesis
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046983F:protein dimerization activity
GO:0070888F:E-box binding
GO:0000785C:chromatin
GO:0005829C:cytosol
GO:1990513C:CLOCK-BMAL transcription complex
Transcription Regulation
SRR924681_primary_scf7180003540619_1-2230
Len: 2,229 bp
Hits: 20
E-val: 3.10E-14
Sim: 85.05%
 CAG00297.1unnamed protein product, partial
GO:0034314P:Arp2/3 complex-mediated actin nucleation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:1905168P:positive regulation of double-strand break repair via homologous recombination
GO:0005524F:ATP binding
GO:0051015F:actin filament binding
GO:0005634C:nucleus
GO:0005885C:Arp2/3 protein complex
GO:0005938C:cell cortex
GO:0016020C:membrane
GO:0035861C:site of double-strand break
GO:0042995C:cell projection
Transcription Regulation
SRR924681_primary_scf7180003541540_1-1419
Len: 1,418 bp
Hits: 20
E-val: 1.20E-232
Sim: 94.91%
 XP_026071758.1zinc finger homeobox protein 3-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0045664P:regulation of neuron differentiation
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003542669_1-979
Len: 978 bp
Hits: 20
E-val: 2.80E-108
Sim: 93.44%
 NP_571619.1homeobox protein Hox-A11a
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0060272P:embryonic skeletal joint morphogenesis
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005654C:nucleoplasm
Transcription Regulation
SRR924681_primary_scf7180003542993_1-1317
Len: 1,316 bp
Hits: 20
E-val: 7.20E-27
Sim: 95.92%
 XP_018938892.1 zinc finger protein 362-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003543156_434-2296
Len: 1,862 bp
Hits: 20
E-val: 8.20E-93
Sim: 73.36%
 XP_018970483.1 ETS-related transcription factor Elf-2-like isoform X1
GO:0006355P:regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0003700F:DNA-binding transcription factor activity
Transcription Regulation
SRR924681_primary_scf7180003543188_1-775
Len: 774 bp
Hits: 20
E-val: 3.90E-49
Sim: 89.04%
 RXN15412.1trinucleotide repeat-containing gene 6C protein-like
GO:0006417P:regulation of translation
GO:0035195P:miRNA-mediated post-transcriptional gene silencing
GO:0060213P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0003723F:RNA binding
GO:0000932C:P-body
GO:0005654C:nucleoplasm
GO:0005829C:cytosol
Transcription Regulation
SRR924681_primary_scf7180003544541_1-1249
Len: 1,248 bp
Hits: 20
E-val: 8.60E-46
Sim: 69.95%
 XP_018936910.1 LOW QUALITY PROTEIN: lysine-specific demethylase 5A-like
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0032259P:methylation
GO:0003677F:DNA binding
GO:0008168F:methyltransferase activity
GO:0008270F:zinc ion binding
GO:0034647F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity
GO:0000785C:chromatin
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003545062_1-956
Len: 955 bp
Hits: 20
E-val: 5.10E-30
Sim: 94.11%
 BAR64671.1nuclear respiratory factor 1, partial
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0003677F:DNA binding
GO:0003700F:DNA-binding transcription factor activity
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003549090_370-1102
Len: 732 bp
Hits: 20
E-val: 6.90E-19
Sim: 85.1%
 XP_026145587.1histone-lysine N-methyltransferase ASH1L-like
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0032259P:methylation
GO:0003677F:DNA binding
GO:0003682F:chromatin binding
GO:0008270F:zinc ion binding
GO:0042800F:histone H3K4 methyltransferase activity
GO:0005654C:nucleoplasm
GO:0005694C:chromosome
Transcription Regulation
SRR924681_primary_scf7180003551469_201-1250
Len: 1,049 bp
Hits: 20
E-val: 4.20E-195
Sim: 94.99%
 XP_016354141.1 protein arginine N-methyltransferase 6
GO:0006281P:DNA repair
GO:0006338P:chromatin remodeling
GO:0032259P:methylation
GO:0045892P:negative regulation of DNA-templated transcription
GO:2000059P:negative regulation of ubiquitin-dependent protein catabolic process
GO:0035241F:protein-arginine omega-N monomethyltransferase activity
GO:0035242F:protein-arginine omega-N asymmetric methyltransferase activity
GO:0035642F:histone H3R17 methyltransferase activity
GO:0042393F:histone binding
GO:0044020F:histone H4R3 methyltransferase activity
GO:0062122F:histone H3K37 methyltransferase activity
GO:0070611F:histone H3R2 methyltransferase activity
GO:0070612F:histone H2AR3 methyltransferase activity
GO:0140592F:histone H3R8 methyltransferase activity
GO:0140759F:histone H3K56 methyltransferase activity
GO:0140903F:histone H3R26 methyltransferase activity
GO:0140984F:histone H4K12 methyltransferase activity
GO:1990259F:histone H2AQ104 methyltransferase activity
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003554278_669-1001
Len: 332 bp
Hits: 20
E-val: 3.90E-14
Sim: 88.76%
 XP_018943113.1 arginine and glutamate-rich protein 1-B
GO:0000381P:regulation of alternative mRNA splicing, via spliceosome
GO:0045893P:positive regulation of DNA-templated transcription
GO:0003713F:transcription coactivator activity
GO:0036002F:pre-mRNA binding
GO:0045296F:cadherin binding
GO:0005694C:chromosome
GO:0005739C:mitochondrion
GO:0016607C:nuclear speck
Transcription Regulation
SRR924681_primary_scf7180003562313_1-841
Len: 840 bp
Hits: 20
E-val: 9.90E-22
Sim: 86.71%
 XP_026086058.1FYVE, RhoGEF and PH domain-containing protein 6-like isoform X1
GO:0006355P:regulation of DNA-templated transcription
GO:0003700F:DNA-binding transcription factor activity
GO:0005085F:guanyl-nucleotide exchange factor activity
GO:0008270F:zinc ion binding
GO:0043565F:sequence-specific DNA binding
GO:0005634C:nucleus
GO:0005737C:cytoplasm
GO:0005856C:cytoskeleton
Transcription Regulation