Gene Function: Transcription Regulation

Functional and statistical data for significant genes

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Showing 1,388 results (Page 19 of 56)
GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR924681_primary_scf7180003722596_1-886
Len: 885 bp
Hits: 20
E-val: 4.50E-89
Sim: 83.56%
 XP_016323600.1 zinc finger and SCAN domain-containing protein 5A-like isoform X1
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001228F:DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0000785C:chromatin
GO:0005667C:transcription regulator complex
GO:0031519C:PcG protein complex
Transcription Regulation
SRR924681_primary_scf7180003730823_1-1183
Len: 1,182 bp
Hits: 20
E-val: 4.80E-30
Sim: 96.8%
 XP_026051048.1transcription factor IIIB 90 kDa subunit-like
GO:0002574P:thrombocyte differentiation
GO:0006383P:transcription by RNA polymerase III
GO:0006413P:translational initiation
GO:0021549P:cerebellum development
GO:0070897P:transcription preinitiation complex assembly
GO:0000995F:RNA polymerase III general transcription initiation factor activity
GO:0001006F:RNA polymerase III type 3 promoter sequence-specific DNA binding
GO:0003743F:translation initiation factor activity
GO:0008270F:zinc ion binding
GO:0017025F:TBP-class protein binding
GO:0000126C:transcription factor TFIIIB complex
GO:0005634C:nucleus
GO:0097550C:transcription preinitiation complex
Transcription Regulation
SRR924681_primary_scf7180003731152_1-1053
Len: 1,052 bp
Hits: 20
E-val: 3.10E-158
Sim: 82.9%
 XP_018981133.1 AT-rich interactive domain-containing protein 1B-like isoform X1
GO:0006338P:chromatin remodeling
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0045893P:positive regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0031491F:nucleosome binding
GO:0005654C:nucleoplasm
GO:0016514C:SWI/SNF complex
GO:0035060C:brahma complex
GO:0071565C:nBAF complex
Transcription Regulation
SRR924681_primary_scf7180003731596_1-642
Len: 641 bp
Hits: 20
E-val: 1.30E-42
Sim: 94.27%
 XP_018932296.1 myocyte-specific enhancer factor 2D homolog
GO:0007507P:heart development
GO:0030154P:cell differentiation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0042826F:histone deacetylase binding
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
GO:0016020C:membrane
Transcription Regulation
SRR924681_primary_scf7180003732131_750-1220
Len: 470 bp
Hits: 20
E-val: 1.00E-76
Sim: 94.74%
 XP_018978629.1 homeobox protein Hox-B8b
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003736123_1-1195
Len: 1,194 bp
Hits: 20
E-val: 3.60E-49
Sim: 90.09%
 XP_018976909.1 prospero homeobox protein 1-like isoform X1
GO:0001946P:lymphangiogenesis
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0021884P:forebrain neuron development
GO:0030239P:myofibril assembly
GO:0048885P:neuromast deposition
GO:0048886P:neuromast hair cell differentiation
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003739033_1-959
Len: 958 bp
Hits: 20
E-val: 3.40E-18
Sim: 97.26%
 NP_001017993.1cleavage and polyadenylation specificity factor subunit 6
GO:0046833P:positive regulation of RNA export from nucleus
GO:0051290P:protein heterotetramerization
GO:0110104P:mRNA alternative polyadenylation
GO:0180010P:co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
GO:0003729F:mRNA binding
GO:0005726C:perichromatin fibrils
GO:0005737C:cytoplasm
GO:0005847C:mRNA cleavage and polyadenylation specificity factor complex
GO:0016607C:nuclear speck
GO:0035061C:interchromatin granule
GO:0042382C:paraspeckles
Transcription Regulation
SRR924681_primary_scf7180003739362_1-911
Len: 910 bp
Hits: 20
E-val: 2.80E-30
Sim: 92.64%
 XP_026138530.1neuronal PAS domain-containing protein 1-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003754196_1-1108
Len: 1,107 bp
Hits: 20
E-val: 2.00E-38
Sim: 95.22%
 XP_016381482.1 PAX3- and PAX7-binding protein 1-like
GO:0000398P:mRNA splicing, via spliceosome
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003677F:DNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003761355_268-1227
Len: 959 bp
Hits: 20
E-val: 1.60E-39
Sim: 97.81%
 XP_016118978.1 GATA-binding factor 2-like, partial
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0003190P:atrioventricular valve formation
GO:0021514P:ventral spinal cord interneuron differentiation
GO:0035912P:dorsal aorta morphogenesis
GO:0045165P:cell fate commitment
GO:0045766P:positive regulation of angiogenesis
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0048821P:erythrocyte development
GO:0060215P:primitive hemopoiesis
GO:1902895P:positive regulation of miRNA transcription
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003995737_1-1201
Len: 1,200 bp
Hits: 20
E-val: 8.90E-16
Sim: 86.99%
 XP_026104810.1ATPase family AAA domain-containing protein 2B-like isoform X3
GO:0006334P:nucleosome assembly
GO:0006337P:nucleosome disassembly
GO:0009653P:anatomical structure morphogenesis
GO:0045815P:transcription initiation-coupled chromatin remodeling
GO:0003682F:chromatin binding
GO:0005524F:ATP binding
GO:0016887F:ATP hydrolysis activity
GO:0042393F:histone binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003996701_1-487
Len: 486 bp
Hits: 20
E-val: 6.50E-50
Sim: 92.72%
 XP_018978629.1 homeobox protein Hox-B8b
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180003997210_1-1134
Len: 1,133 bp
Hits: 20
E-val: 4.60E-22
Sim: 84.01%
 XP_016337382.1 DNA (cytosine-5)-methyltransferase 3A-like isoform X1
GO:0032259P:methylation
GO:0045892P:negative regulation of DNA-templated transcription
GO:0008270F:zinc ion binding
GO:0051719F:DNA (cytosine-5-)-methyltransferase activity, acting on CpN substrates
GO:0051720F:DNA (cytosine-5-)-methyltransferase activity, acting on CpNpG substrates
GO:0005634C:nucleus
GO:0005737C:cytoplasm
Transcription Regulation
SRR924681_primary_scf7180004000321_499-1225
Len: 726 bp
Hits: 20
E-val: 8.30E-25
Sim: 82.96%
 ROJ19173.1putative JmjC domain-containing histone demethylation protein 2C
GO:0002244P:hematopoietic progenitor cell differentiation
GO:0006338P:chromatin remodeling
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0003712F:transcription coregulator activity
GO:0008270F:zinc ion binding
GO:0031490F:chromatin DNA binding
GO:0032454F:histone H3K9 demethylase activity
GO:0051213F:dioxygenase activity
GO:0000118C:histone deacetylase complex
GO:0000785C:chromatin
Transcription Regulation
SRR924681_primary_scf7180004000983_1-572
Len: 571 bp
Hits: 20
E-val: 4.80E-36
Sim: 84.64%
 XP_018936910.1 LOW QUALITY PROTEIN: lysine-specific demethylase 5A-like
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0032259P:methylation
GO:0003677F:DNA binding
GO:0008168F:methyltransferase activity
GO:0008270F:zinc ion binding
GO:0034647F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity
GO:0000785C:chromatin
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180004004056_62-1185
Len: 1,123 bp
Hits: 20
E-val: 2.60E-62
Sim: 88.04%
 XP_018962366.1 Krueppel-like factor 9
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0042098P:T cell proliferation
GO:0043249P:erythrocyte maturation
GO:2000374P:regulation of oxygen metabolic process
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
Transcription Regulation
SRR924681_primary_scf7180004005648_1-604
Len: 603 bp
Hits: 20
E-val: 4.90E-23
Sim: 99.74%
 XP_018940664.1 transcription factor EB
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0006959P:humoral immune response
GO:0022010P:central nervous system myelination
GO:0045893P:positive regulation of DNA-templated transcription
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
GO:0005737C:cytoplasm
Transcription Regulation
SRR924681_primary_scf7180004011763_166-1003
Len: 837 bp
Hits: 20
E-val: 3.10E-23
Sim: 95.76%
 CAG01794.1unnamed protein product
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0010628P:positive regulation of gene expression
GO:0043473P:pigmentation
GO:0050768P:negative regulation of neurogenesis
GO:0072359P:circulatory system development
GO:0005667C:transcription regulator complex
GO:0016592C:mediator complex
Transcription Regulation
SRR924681_primary_scf7180004013800_1-975
Len: 974 bp
Hits: 20
E-val: 3.90E-54
Sim: 98.02%
 XP_016099626.1 synaptotagmin-13-like
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0017158P:regulation of calcium ion-dependent exocytosis
GO:0048488P:synaptic vesicle endocytosis
GO:0048791P:calcium ion-regulated exocytosis of neurotransmitter
GO:0099502P:calcium-dependent activation of synaptic vesicle fusion
GO:2000300P:regulation of synaptic vesicle exocytosis
GO:0000149F:SNARE binding
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001227F:DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001786F:phosphatidylserine binding
GO:0005509F:calcium ion binding
GO:0005544F:calcium-dependent phospholipid binding
GO:0008270F:zinc ion binding
GO:0016740F:transferase activity
GO:0030276F:clathrin binding
GO:0061891F:calcium ion sensor activity
GO:0005654C:nucleoplasm
GO:0005886C:plasma membrane
GO:0030424C:axon
GO:0030672C:synaptic vesicle membrane
GO:0031045C:dense core granule
Transcription Regulation
SRR924681_primary_scf7180004024728_305-1081
Len: 776 bp
Hits: 20
E-val: 9.80E-16
Sim: 97.5%
 NP_957203.1cyclic AMP-responsive element-binding protein 1
GO:0001756P:somitogenesis
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0030917P:midbrain-hindbrain boundary development
GO:0060028P:convergent extension involved in axis elongation
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0035497F:cAMP response element binding
GO:1990589C:ATF4-CREB1 transcription factor complex
Transcription Regulation
SRR924681_primary_scf7180004042060_1-914
Len: 913 bp
Hits: 20
E-val: 3.70E-22
Sim: 95.58%
 XP_016352586.1 paired amphipathic helix protein Sin3a-like
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0007507P:heart development
GO:0003714F:transcription corepressor activity
GO:0070822C:Sin3-type complex
Transcription Regulation
SRR924681_primary_scf7180004059762_1-1039
Len: 1,038 bp
Hits: 20
E-val: 3.20E-62
Sim: 86.7%
 XP_016328696.1 zinc finger protein basonuclin-2-like, partial
GO:0006355P:regulation of DNA-templated transcription
GO:0039020P:pronephric nephron tubule development
GO:0048066P:developmental pigmentation
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924681_primary_scf7180004069277_1-1023
Len: 1,022 bp
Hits: 20
E-val: 2.50E-27
Sim: 71.98%
 XP_026105170.1MHC class II regulatory factor RFX1-like isoform X1
GO:0006355P:regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0003700F:DNA-binding transcription factor activity
Transcription Regulation
SRR924681_primary_scf7180004478140_1-1124
Len: 1,123 bp
Hits: 20
E-val: 4.20E-185
Sim: 90.34%
 XP_018977977.1 interferon regulatory factor 2-binding protein 1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007165P:signal transduction
GO:0035461P:vitamin transmembrane transport
GO:0045892P:negative regulation of DNA-templated transcription
GO:0003714F:transcription corepressor activity
GO:0005179F:hormone activity
GO:0090482F:vitamin transmembrane transporter activity
GO:0005576C:extracellular region
GO:0005634C:nucleus
GO:0005886C:plasma membrane
Transcription Regulation
SRR941867_primary_scf7180002027900_1-5195
Len: 5,194 bp
Hits: 20
E-val: 0
Sim: 96.03%
 XP_026124164.1zinc finger homeobox protein 3-like isoform X2
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0045664P:regulation of neuron differentiation
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation