Gene Function: Transcription Regulation

Functional and statistical data for significant genes

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GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR924327_primary_scf7180002228169_406-4293
Len: 3,887 bp
Hits: 20
E-val: 0
Sim: 84.06%
 XP_018980507.1 LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ASH1L-like
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0032259P:methylation
GO:0003677F:DNA binding
GO:0003682F:chromatin binding
GO:0008270F:zinc ion binding
GO:0042800F:histone H3K4 methyltransferase activity
GO:0005654C:nucleoplasm
GO:0005694C:chromosome
Transcription Regulation
SRR924327_primary_scf7180002228240_1-3228
Len: 3,227 bp
Hits: 20
E-val: 1.20E-280
Sim: 88.63%
 XP_016377266.1 CREB-binding protein-like
GO:0006338P:chromatin remodeling
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0048511P:rhythmic process
GO:0003713F:transcription coactivator activity
GO:0008270F:zinc ion binding
GO:0031490F:chromatin DNA binding
GO:0032931F:histone H3K56 acetyltransferase activity
GO:0036408F:histone H3K14 acetyltransferase activity
GO:0043992F:histone H3K9 acetyltransferase activity
GO:0043993F:histone H3K18 acetyltransferase activity
GO:0043994F:histone H3K23 acetyltransferase activity
GO:0043995F:histone H4K5 acetyltransferase activity
GO:0043996F:histone H4K8 acetyltransferase activity
GO:0043997F:histone H4K12 acetyltransferase activity
GO:0043999F:histone H2AK5 acetyltransferase activity
GO:0044012F:histone H2AK9 acetyltransferase activity
GO:0044014F:histone H2BK5 acetyltransferase activity
GO:0044015F:histone H2BK12 acetyltransferase activity
GO:0044016F:histone H3K4 acetyltransferase activity
GO:0044017F:histone H3K27 acetyltransferase activity
GO:0044018F:histone H3K36 acetyltransferase activity
GO:0046972F:histone H4K16 acetyltransferase activity
GO:0140297F:DNA-binding transcription factor binding
GO:0140908F:histone H3K122 acetyltransferase activity
GO:0000123C:histone acetyltransferase complex
GO:0005654C:nucleoplasm
GO:0005667C:transcription regulator complex
GO:0005737C:cytoplasm
Transcription Regulation
SRR924327_primary_scf7180002228404_355-1074
Len: 719 bp
Hits: 20
E-val: 1.50E-127
Sim: 90.44%
 XP_018978879.1 cbp/p300-interacting transactivator 3-like
GO:0045893P:positive regulation of DNA-templated transcription
GO:0003713F:transcription coactivator activity
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002228650_1-1627
Len: 1,626 bp
Hits: 20
E-val: 4.90E-17
Sim: 99.68%
 XP_018955811.1 LOW QUALITY PROTEIN: peregrin-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0009952P:anterior/posterior pattern specification
GO:0008270F:zinc ion binding
GO:0042393F:histone binding
GO:0070776C:MOZ/MORF histone acetyltransferase complex
Transcription Regulation
SRR924327_primary_scf7180002228714_374-1195
Len: 821 bp
Hits: 20
E-val: 6.50E-34
Sim: 89.6%
 XP_018966786.1 RNA helicase Mov10l1-like
GO:0035194P:regulatory ncRNA-mediated post-transcriptional gene silencing
GO:0003723F:RNA binding
GO:0004386F:helicase activity
GO:0005829C:cytosol
GO:0043186C:P granule
Transcription Regulation
SRR924327_primary_scf7180002228863_538-1828
Len: 1,290 bp
Hits: 20
E-val: 4.00E-107
Sim: 96.72%
 XP_018960486.1 homeobox protein Nkx-2.4-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0021854P:hypothalamus development
GO:0030154P:cell differentiation
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002229048_437-1654
Len: 1,217 bp
Hits: 20
E-val: 2.60E-228
Sim: 98.33%
 XP_018933785.1 zinc finger protein 711-like
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:1903706P:regulation of hemopoiesis
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001228F:DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
GO:0005737C:cytoplasm
GO:0060388C:vitelline envelope
Transcription Regulation
SRR924327_primary_scf7180002229328_506-1471
Len: 965 bp
Hits: 20
E-val: 1.80E-189
Sim: 95.69%
 XP_016306383.1 zinc finger protein ZIC 5-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0021510P:spinal cord development
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002229471_484-1221
Len: 737 bp
Hits: 20
E-val: 1.20E-132
Sim: 95.94%
 XP_018970669.1 homeobox protein SIX4-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
GO:0005667C:transcription regulator complex
Transcription Regulation
SRR924327_primary_scf7180002229750_1-723
Len: 722 bp
Hits: 20
E-val: 2.10E-49
Sim: 96.27%
 XP_018955608.1 histone-lysine N-methyltransferase PRDM9-like
GO:0006338P:chromatin remodeling
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007129P:homologous chromosome pairing at meiosis
GO:0007292P:female gamete generation
GO:0032259P:methylation
GO:0043066P:negative regulation of apoptotic process
GO:0048232P:male gamete generation
GO:1905516P:positive regulation of fertilization
GO:1990918P:double-strand break repair involved in meiotic recombination
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0010844F:recombination hotspot binding
GO:0042803F:protein homodimerization activity
GO:0140941F:histone H4K20me methyltransferase activity
GO:0140944F:histone H4K20 monomethyltransferase activity
GO:0140949F:histone H3K9 trimethyltransferase activity
GO:0140955F:histone H3K36 trimethyltransferase activity
GO:0140999F:histone H3K4 trimethyltransferase activity
GO:0005634C:nucleus
GO:0005694C:chromosome
Transcription Regulation
SRR924327_primary_scf7180002229969_1-1238
Len: 1,237 bp
Hits: 20
E-val: 7.60E-103
Sim: 93.33%
 XP_016107473.1 one cut domain family member 2 isoform X3
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002230141_1-542
Len: 541 bp
Hits: 20
E-val: 5.50E-98
Sim: 98.27%
 XP_018966989.1 zinc finger protein ZIC 5-like isoform X1
GO:0001841P:neural tube formation
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0033278P:cell proliferation in midbrain
GO:0042127P:regulation of cell population proliferation
GO:0050767P:regulation of neurogenesis
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002230334_1-322
Len: 321 bp
Hits: 4
E-val: 1.80E-11
Sim: 77.2%
 XP_010786455.1 CREB-binding protein
GO:0006338P:chromatin remodeling
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003713F:transcription coactivator activity
GO:0008270F:zinc ion binding
GO:0031490F:chromatin DNA binding
GO:0032931F:histone H3K56 acetyltransferase activity
GO:0036408F:histone H3K14 acetyltransferase activity
GO:0043992F:histone H3K9 acetyltransferase activity
GO:0043993F:histone H3K18 acetyltransferase activity
GO:0043994F:histone H3K23 acetyltransferase activity
GO:0043995F:histone H4K5 acetyltransferase activity
GO:0043996F:histone H4K8 acetyltransferase activity
GO:0043997F:histone H4K12 acetyltransferase activity
GO:0043999F:histone H2AK5 acetyltransferase activity
GO:0044012F:histone H2AK9 acetyltransferase activity
GO:0044014F:histone H2BK5 acetyltransferase activity
GO:0044015F:histone H2BK12 acetyltransferase activity
GO:0044016F:histone H3K4 acetyltransferase activity
GO:0044017F:histone H3K27 acetyltransferase activity
GO:0044018F:histone H3K36 acetyltransferase activity
GO:0046972F:histone H4K16 acetyltransferase activity
GO:0140908F:histone H3K122 acetyltransferase activity
GO:0000123C:histone acetyltransferase complex
GO:0005654C:nucleoplasm
GO:0005667C:transcription regulator complex
Transcription Regulation
SRR924327_primary_scf7180002233530_319-1398
Len: 1,079 bp
Hits: 20
E-val: 5.80E-192
Sim: 92.9%
 XP_026068064.1nucleus accumbens-associated protein 2-like isoform X3
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
Transcription Regulation
SRR924327_primary_scf7180002233819_1-408
Len: 407 bp
Hits: 20
E-val: 1.60E-30
Sim: 97.78%
 XP_026087597.1hepatic leukemia factor-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002234096_1-846
Len: 845 bp
Hits: 20
E-val: 1.10E-23
Sim: 87.24%
 XP_009304785.1probable JmjC domain-containing histone demethylation protein 2C isoform X1
GO:0006338P:chromatin remodeling
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0061515P:myeloid cell development
GO:0003712F:transcription coregulator activity
GO:0008270F:zinc ion binding
GO:0031490F:chromatin DNA binding
GO:0032454F:histone H3K9 demethylase activity
GO:0051213F:dioxygenase activity
GO:0000118C:histone deacetylase complex
GO:0000785C:chromatin
Transcription Regulation
SRR924327_primary_scf7180002234408_254-1351
Len: 1,097 bp
Hits: 15
E-val: 5.50E-73
Sim: 66.9%
 XP_018963428.1 zinc finger protein 32-like isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003700F:DNA-binding transcription factor activity
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002234417_804-1142
Len: 338 bp
Hits: 20
E-val: 1.70E-36
Sim: 94.18%
 XP_016359525.1 zinc finger and BTB domain-containing protein 43-like isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
Transcription Regulation
SRR924327_primary_scf7180002234443_426-1325
Len: 899 bp
Hits: 20
E-val: 3.40E-52
Sim: 98.68%
 RXN18950.1transcription factor -like protein
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0030154P:cell differentiation
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0043565F:sequence-specific DNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002234456_1-937
Len: 936 bp
Hits: 20
E-val: 2.10E-44
Sim: 72.98%
 XP_026131467.1lysine-specific demethylase 5B-like
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0005488F:binding
GO:0034647F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity
GO:0000785C:chromatin
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002234944_197-949
Len: 752 bp
Hits: 20
E-val: 8.10E-108
Sim: 85.72%
 XP_016113043.1 protein lin-54 homolog
GO:0006355P:regulation of DNA-templated transcription
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002235011_313-1071
Len: 758 bp
Hits: 20
E-val: 5.00E-65
Sim: 62.62%
 XP_018962752.1 CCAAT/enhancer-binding protein gamma-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002235148_1-1139
Len: 1,138 bp
Hits: 20
E-val: 9.60E-36
Sim: 98.62%
 AAC41256.1transcription factor PAX7D
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007399P:nervous system development
GO:0009653P:anatomical structure morphogenesis
GO:0042060P:wound healing
GO:0050938P:regulation of xanthophore differentiation
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002235327_84-1343
Len: 1,259 bp
Hits: 20
E-val: 6.50E-17
Sim: 84.8%
 RXN03671.1CBFA2T2-like isoform X1
GO:0045892P:negative regulation of DNA-templated transcription
GO:0003714F:transcription corepressor activity
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002235376_1-534
Len: 533 bp
Hits: 20
E-val: 6.10E-94
Sim: 98.89%
 BAA33565.1MyoD
GO:0002074P:extraocular skeletal muscle development
GO:0035914P:skeletal muscle cell differentiation
GO:0043282P:chordate pharyngeal muscle development
GO:0045663P:positive regulation of myoblast differentiation
GO:0048743P:positive regulation of skeletal muscle fiber development
GO:0071392P:cellular response to estradiol stimulus
GO:1905382P:positive regulation of snRNA transcription by RNA polymerase II
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001216F:DNA-binding transcription activator activity
GO:0046983F:protein dimerization activity
GO:0070888F:E-box binding
GO:1990841F:promoter-specific chromatin binding
GO:0005634C:nucleus
Transcription Regulation