Gene Function: Transcription Regulation

Functional and statistical data for significant genes

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GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR924327_primary_scf7180002251923_246-1186
Len: 940 bp
Hits: 20
E-val: 7.20E-114
Sim: 78.78%
 XP_018927448.1 zinc finger protein 84-like
GO:0006355P:regulation of DNA-templated transcription
GO:0032259P:methylation
GO:0003677F:DNA binding
GO:0008168F:methyltransferase activity
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
GO:0016020C:membrane
Transcription Regulation
SRR924327_primary_scf7180002253055_1-903
Len: 902 bp
Hits: 20
E-val: 6.90E-13
Sim: 98.68%
 XP_026099119.1methyl-CpG-binding domain protein 2-like
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0006346P:DNA methylation-dependent constitutive heterochromatin formation
GO:0008327F:methyl-CpG binding
GO:0005654C:nucleoplasm
Transcription Regulation
SRR924327_primary_scf7180002271855_200-1900
Len: 1,700 bp
Hits: 20
E-val: 8.20E-15
Sim: 99.26%
 ROL49870.1DNA-directed RNA polymerases I, II, and III subunit RPABC2
GO:0006360P:transcription by RNA polymerase I
GO:0006366P:transcription by RNA polymerase II
GO:0042797P:tRNA transcription by RNA polymerase III
GO:0003677F:DNA binding
GO:0003899F:DNA-directed RNA polymerase activity
GO:0005665C:RNA polymerase II, core complex
GO:0005666C:RNA polymerase III complex
GO:0005736C:RNA polymerase I complex
Transcription Regulation
SRR924327_primary_scf7180002272099_347-1870
Len: 1,523 bp
Hits: 20
E-val: 2.90E-72
Sim: 56.45%
 ROL51636.1CCR4-NOT transcription complex subunit 1
GO:0010558P:negative regulation of macromolecule biosynthetic process
GO:0010608P:post-transcriptional regulation of gene expression
GO:0048522P:positive regulation of cellular process
GO:0048589P:developmental growth
GO:0051252P:regulation of RNA metabolic process
Transcription Regulation
SRR924327_primary_scf7180002272324_12-1298
Len: 1,286 bp
Hits: 20
E-val: 3.20E-213
Sim: 89.94%
 XP_016094796.1 zinc finger protein 536-like isoform X3
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002272409_491-1201
Len: 710 bp
Hits: 20
E-val: 6.40E-131
Sim: 98.83%
 RXN09744.1homeobox SIX3-like protein
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007420P:brain development
GO:0021631P:optic nerve morphogenesis
GO:0048596P:embryonic camera-type eye morphogenesis
GO:0070654P:sensory epithelium regeneration
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
GO:0005667C:transcription regulator complex
Transcription Regulation
SRR924327_primary_scf7180002272884_1-590
Len: 589 bp
Hits: 20
E-val: 1.60E-13
Sim: 98.15%
 XP_026083565.1TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X2
GO:0006366P:transcription by RNA polymerase II
GO:0045893P:positive regulation of DNA-templated transcription
GO:0003713F:transcription coactivator activity
GO:0016251F:RNA polymerase II general transcription initiation factor activity
GO:0000124C:SAGA complex
GO:0033276C:transcription factor TFTC complex
Transcription Regulation
SRR924327_primary_scf7180002273045_790-1458
Len: 668 bp
Hits: 20
E-val: 2.80E-75
Sim: 78.77%
 ROL42282.1Zinc finger BED domain-containing protein 1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0015074P:DNA integration
GO:0003677F:DNA binding
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002273108_1-513
Len: 512 bp
Hits: 20
E-val: 3.20E-31
Sim: 92.38%
 XP_018930978.1 short stature homeobox protein 2 isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007507P:heart development
GO:0008016P:regulation of heart contraction
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:1990837F:sequence-specific double-stranded DNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002273110_1-1266
Len: 1,265 bp
Hits: 20
E-val: 1.50E-58
Sim: 57.13%
 RXN35553.1vasculin 1
GO:0006351P:DNA-templated transcription
GO:0006355P:regulation of DNA-templated transcription
GO:0045893P:positive regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0003723F:RNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002273243_1-1572
Len: 1,571 bp
Hits: 20
E-val: 1.00E-40
Sim: 82.02%
 XP_018969442.1 LOW QUALITY PROTEIN: cell division cycle and apoptosis regulator protein 1-like
GO:0006355P:regulation of DNA-templated transcription
GO:0016226P:iron-sulfur cluster assembly
GO:0051301P:cell division
GO:0005506F:iron ion binding
GO:0051536F:iron-sulfur cluster binding
GO:0005634C:nucleus
GO:0005737C:cytoplasm
Transcription Regulation
SRR924327_primary_scf7180002273335_211-1413
Len: 1,202 bp
Hits: 20
E-val: 9.30E-199
Sim: 93.18%
 XP_018925690.1 transcription factor Sp8-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002273747_1-825
Len: 824 bp
Hits: 20
E-val: 2.30E-132
Sim: 91.95%
 XP_018927731.1 transcription factor MafA-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002273879_1-1500
Len: 1,499 bp
Hits: 20
E-val: 4.40E-97
Sim: 73.18%
 XP_018971750.1 transducin-like enhancer protein 1
GO:0006355P:regulation of DNA-templated transcription
GO:0048523P:negative regulation of cellular process
Transcription Regulation
SRR924327_primary_scf7180002273972_1-991
Len: 990 bp
Hits: 20
E-val: 5.80E-13
Sim: 100%
 XP_026065628.1inactive histone-lysine N-methyltransferase 2E-like isoform X4
GO:0006325P:chromatin organization
GO:0006355P:regulation of DNA-templated transcription
GO:0008270F:zinc ion binding
GO:0034967C:Set3 complex
GO:0070210C:Rpd3L-Expanded complex
Transcription Regulation
SRR924327_primary_scf7180002274045_1-1022
Len: 1,021 bp
Hits: 20
E-val: 9.20E-22
Sim: 98.28%
 XP_016109477.1 enhancer of polycomb homolog 1-like
GO:0006325P:chromatin organization
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0005634C:nucleus
GO:0016020C:membrane
GO:0035267C:NuA4 histone acetyltransferase complex
Transcription Regulation
SRR924327_primary_scf7180002274301_1-1016
Len: 1,015 bp
Hits: 20
E-val: 6.80E-17
Sim: 98.34%
 XP_026102731.1serine--tRNA ligase, cytoplasmic-like
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0001569P:branching involved in blood vessel morphogenesis
GO:0002181P:cytoplasmic translation
GO:0006434P:seryl-tRNA aminoacylation
GO:0061300P:cerebellum vasculature development
GO:1903671P:negative regulation of sprouting angiogenesis
GO:1904046P:negative regulation of vascular endothelial growth factor production
GO:0000049F:tRNA binding
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0004828F:serine-tRNA ligase activity
GO:0005524F:ATP binding
GO:0005634C:nucleus
GO:0005829C:cytosol
Transcription Regulation
SRR924327_primary_scf7180002274403_1-352
Len: 351 bp
Hits: 20
E-val: 5.60E-19
Sim: 84.03%
 XP_026067268.1protein SCAI-like isoform X3
GO:0045892P:negative regulation of DNA-templated transcription
GO:0003714F:transcription corepressor activity
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002275070_383-851
Len: 468 bp
Hits: 20
E-val: 2.50E-30
Sim: 98.48%
 XP_018963888.1 nuclear transcription factor Y subunit alpha-like isoform X1
GO:0006355P:regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0003700F:DNA-binding transcription factor activity
GO:0016602C:CCAAT-binding factor complex
Transcription Regulation
SRR924327_primary_scf7180002275341_1-1257
Len: 1,256 bp
Hits: 20
E-val: 1.00E-54
Sim: 86.5%
 XP_016407821.1 peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like
GO:0009100P:glycoprotein metabolic process
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003712F:transcription coregulator activity
GO:0003723F:RNA binding
GO:0016231F:beta-N-acetylglucosaminidase activity
GO:0005634C:nucleus
Transcription Regulation
SRR924327_primary_scf7180002275765_176-679
Len: 503 bp
Hits: 20
E-val: 4.00E-26
Sim: 84.14%
 XP_016384466.1 LOW QUALITY PROTEIN: RNA helicase Mov10l1
GO:0035194P:regulatory ncRNA-mediated post-transcriptional gene silencing
GO:0003723F:RNA binding
GO:0004386F:helicase activity
GO:0005829C:cytosol
GO:0043186C:P granule
Transcription Regulation
SRR924327_primary_scf7180002275794_614-1209
Len: 595 bp
Hits: 20
E-val: 8.90E-17
Sim: 96.17%
 XP_026067585.1ruvB-like 2
GO:0000492P:box C/D snoRNP assembly
GO:0003351P:epithelial cilium movement involved in extracellular fluid movement
GO:0006281P:DNA repair
GO:0006310P:DNA recombination
GO:0006338P:chromatin remodeling
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0044458P:motile cilium assembly
GO:0045892P:negative regulation of DNA-templated transcription
GO:0048565P:digestive tract development
GO:0060420P:regulation of heart growth
GO:0070286P:axonemal dynein complex assembly
GO:0005524F:ATP binding
GO:0009378F:four-way junction helicase activity
GO:0016887F:ATP hydrolysis activity
GO:0036121F:double-stranded DNA helicase activity
GO:0061749F:forked DNA-dependent helicase activity
GO:1990518F:single-stranded 3'-5' DNA helicase activity
GO:0000812C:Swr1 complex
GO:0005576C:extracellular region
GO:0031011C:Ino80 complex
GO:0035267C:NuA4 histone acetyltransferase complex
GO:0071339C:MLL1 complex
GO:0097255C:R2TP complex
GO:0120293C:dynein axonemal particle
Transcription Regulation
SRR924327_primary_scf7180002275978_108-1300
Len: 1,192 bp
Hits: 20
E-val: 1.90E-71
Sim: 51.05%
 XP_018953217.1 host cell factor 1-like
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0007420P:brain development
GO:0045893P:positive regulation of DNA-templated transcription
GO:0003713F:transcription coactivator activity
GO:0005634C:nucleus
GO:0035097C:histone methyltransferase complex
Transcription Regulation
SRR924327_primary_scf7180002276128_376-1146
Len: 770 bp
Hits: 20
E-val: 1.00E-97
Sim: 83.03%
 XP_018945246.1 actin-binding Rho-activating protein-like
GO:0007507P:heart development
GO:0008015P:blood circulation
GO:0035025P:positive regulation of Rho protein signal transduction
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003779F:actin binding
GO:0030017C:sarcomere
Transcription Regulation
SRR924327_primary_scf7180002276297_635-1171
Len: 536 bp
Hits: 20
E-val: 5.10E-88
Sim: 81.41%
 XP_018957455.1 nucleus accumbens-associated protein 2-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
Transcription Regulation