Gene Function: Transcription Regulation

Functional and statistical data for significant genes

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Showing 1,388 results (Page 49 of 56)
GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR953582_primary_scf7180002047324_954-1824
Len: 870 bp
Hits: 20
E-val: 1.00E-69
Sim: 92.8%
 XP_018970483.1 ETS-related transcription factor Elf-2-like isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0030154P:cell differentiation
GO:0045893P:positive regulation of DNA-templated transcription
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0043565F:sequence-specific DNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002047630_1-625
Len: 624 bp
Hits: 20
E-val: 7.60E-27
Sim: 91.76%
 XP_026062425.1CREB-regulated transcription coactivator 1-like isoform X3
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0051289P:protein homotetramerization
GO:0008140F:cAMP response element binding protein binding
GO:0005634C:nucleus
GO:0005737C:cytoplasm
Transcription Regulation
SRR953582_primary_scf7180002050880_1-602
Len: 601 bp
Hits: 20
E-val: 8.40E-23
Sim: 86.45%
 XP_026058679.1bromodomain-containing protein 1-like isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0008270F:zinc ion binding
GO:0070776C:MOZ/MORF histone acetyltransferase complex
Transcription Regulation
SRR953582_primary_scf7180002051401_1-1001
Len: 1,000 bp
Hits: 20
E-val: 7.30E-64
Sim: 61.68%
 XP_016091757.1 visual system homeobox 1-like isoform X1
GO:0021501P:prechordal plate formation
GO:0030900P:forebrain development
GO:0045892P:negative regulation of DNA-templated transcription
GO:0048329P:negative regulation of axial mesodermal cell fate specification
GO:0048348P:paraxial mesodermal cell fate specification
GO:0000976F:transcription cis-regulatory region binding
GO:0003682F:chromatin binding
Transcription Regulation
SRR953582_primary_scf7180002052693_1-514
Len: 513 bp
Hits: 20
E-val: 4.80E-19
Sim: 89.39%
 XP_010790129.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like
GO:0006338P:chromatin remodeling
GO:0006508P:proteolysis
GO:0030198P:extracellular matrix organization
GO:0030574P:collagen catabolic process
GO:0045597P:positive regulation of cell differentiation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0051091P:positive regulation of DNA-binding transcription factor activity
GO:1902459P:positive regulation of stem cell population maintenance
GO:2000781P:positive regulation of double-strand break repair
GO:0003677F:DNA binding
GO:0003713F:transcription coactivator activity
GO:0004222F:metalloendopeptidase activity
GO:0008270F:zinc ion binding
GO:0030957F:Tat protein binding
GO:0000228C:nuclear chromosome
GO:0001650C:fibrillar center
GO:0005615C:extracellular space
GO:0005654C:nucleoplasm
GO:0016020C:membrane
GO:0016586C:RSC-type complex
GO:0031012C:extracellular matrix
GO:0035060C:brahma complex
GO:0071564C:npBAF complex
GO:0071565C:nBAF complex
Transcription Regulation
SRR953582_primary_scf7180002053226_1-1341
Len: 1,340 bp
Hits: 20
E-val: 6.60E-20
Sim: 81.34%
 XP_026112724.1neuronal PAS domain-containing protein 2-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0009648P:photoperiodism
GO:0032922P:circadian regulation of gene expression
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046983F:protein dimerization activity
GO:0005737C:cytoplasm
GO:1990513C:CLOCK-BMAL transcription complex
Transcription Regulation
SRR953582_primary_scf7180002053577_1-1754
Len: 1,753 bp
Hits: 20
E-val: 1.60E-26
Sim: 90.22%
 XP_016410442.1 CREB-binding protein-like isoform X1
GO:0006338P:chromatin remodeling
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0048511P:rhythmic process
GO:0003713F:transcription coactivator activity
GO:0008270F:zinc ion binding
GO:0031490F:chromatin DNA binding
GO:0032931F:histone H3K56 acetyltransferase activity
GO:0036408F:histone H3K14 acetyltransferase activity
GO:0043992F:histone H3K9 acetyltransferase activity
GO:0043993F:histone H3K18 acetyltransferase activity
GO:0043994F:histone H3K23 acetyltransferase activity
GO:0043995F:histone H4K5 acetyltransferase activity
GO:0043996F:histone H4K8 acetyltransferase activity
GO:0043997F:histone H4K12 acetyltransferase activity
GO:0043999F:histone H2AK5 acetyltransferase activity
GO:0044012F:histone H2AK9 acetyltransferase activity
GO:0044014F:histone H2BK5 acetyltransferase activity
GO:0044015F:histone H2BK12 acetyltransferase activity
GO:0044016F:histone H3K4 acetyltransferase activity
GO:0044017F:histone H3K27 acetyltransferase activity
GO:0044018F:histone H3K36 acetyltransferase activity
GO:0046972F:histone H4K16 acetyltransferase activity
GO:0140297F:DNA-binding transcription factor binding
GO:0140908F:histone H3K122 acetyltransferase activity
GO:0000123C:histone acetyltransferase complex
GO:0005654C:nucleoplasm
GO:0005667C:transcription regulator complex
GO:0005737C:cytoplasm
Transcription Regulation
SRR953582_primary_scf7180002054679_1-772
Len: 771 bp
Hits: 20
E-val: 3.90E-33
Sim: 65.33%
 XP_018971779.1 LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1-like
GO:0001059P:transcription by RNA polymerase IV
GO:0001060P:transcription by RNA polymerase V
GO:0006360P:transcription by RNA polymerase I
GO:0006366P:transcription by RNA polymerase II
GO:0006383P:transcription by RNA polymerase III
GO:0006390P:mitochondrial transcription
GO:0009303P:rRNA transcription
GO:0014032P:neural crest cell development
GO:0042793P:plastid transcription
GO:0048703P:embryonic viscerocranium morphogenesis
GO:0003677F:DNA binding
GO:0003899F:DNA-directed RNA polymerase activity
GO:0005736C:RNA polymerase I complex
GO:0005739C:mitochondrion
Transcription Regulation
SRR953582_primary_scf7180002055963_1-881
Len: 880 bp
Hits: 20
E-val: 3.70E-43
Sim: 83.75%
 XP_026068168.1general transcription factor II-I repeat domain-containing protein 1-like isoform X2
GO:0006355P:regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0003700F:DNA-binding transcription factor activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002056225_1-577
Len: 576 bp
Hits: 20
E-val: 3.60E-55
Sim: 99.15%
 XP_018958534.1 calmodulin-binding transcription activator 1-like isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007399P:nervous system development
GO:0003690F:double-stranded DNA binding
GO:0003712F:transcription coregulator activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002057415_1-954
Len: 953 bp
Hits: 20
E-val: 1.80E-27
Sim: 97.92%
 XP_018964047.1 lysine-specific demethylase 5B-B
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0032259P:methylation
GO:0003677F:DNA binding
GO:0008168F:methyltransferase activity
GO:0008270F:zinc ion binding
GO:0034647F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity
GO:0000785C:chromatin
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002057510_1-754
Len: 753 bp
Hits: 20
E-val: 9.80E-29
Sim: 91.07%
 XP_016403284.1 peptidyl-prolyl cis-trans isomerase FKBP10-like, partial
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0006457P:protein folding
GO:0005509F:calcium ion binding
GO:0140839F:RNA polymerase II CTD heptapeptide repeat P3 isomerase activity
GO:0140840F:RNA polymerase II CTD heptapeptide repeat P6 isomerase activity
GO:0005783C:endoplasmic reticulum
Transcription Regulation
SRR953582_primary_scf7180002058065_1-398
Len: 397 bp
Hits: 20
E-val: 1.20E-20
Sim: 92.22%
 NP_956288.1transcription elongation factor A protein 1
GO:0006368P:transcription elongation by RNA polymerase II
GO:0006414P:translational elongation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003677F:DNA binding
GO:0003746F:translation elongation factor activity
GO:0008270F:zinc ion binding
GO:0005669C:transcription factor TFIID complex
Transcription Regulation
SRR953582_primary_scf7180002060373_1-706
Len: 705 bp
Hits: 20
E-val: 2.00E-39
Sim: 94.84%
 XP_026062857.1ATP-binding cassette sub-family F member 3
GO:0006352P:DNA-templated transcription initiation
GO:0005524F:ATP binding
GO:0016887F:ATP hydrolysis activity
GO:0000428C:DNA-directed RNA polymerase complex
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002060521_385-774
Len: 389 bp
Hits: 20
E-val: 1.50E-65
Sim: 89.74%
 XP_018918525.1 retinal homeobox protein Rx3
GO:0001708P:cell fate specification
GO:0001755P:neural crest cell migration
GO:0021854P:hypothalamus development
GO:0021984P:adenohypophysis development
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0060041P:retina development in camera-type eye
GO:0060898P:eye field cell fate commitment involved in camera-type eye formation
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002061438_1-1039
Len: 1,038 bp
Hits: 20
E-val: 1.70E-34
Sim: 94.47%
 XP_018976465.1 myelin transcription factor 1-like protein
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002063547_1-1028
Len: 1,027 bp
Hits: 20
E-val: 1.40E-54
Sim: 55.04%
 XP_016303215.1 AT-rich interactive domain-containing protein 2-like isoform X3
GO:0006338P:chromatin remodeling
GO:0006355P:regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0035060C:brahma complex
Transcription Regulation
SRR953582_primary_scf7180002063649_1-1307
Len: 1,306 bp
Hits: 20
E-val: 1.70E-52
Sim: 95.44%
 XP_026059437.1transcription initiation factor TFIID subunit 5-like
GO:0006367P:transcription initiation at RNA polymerase II promoter
GO:0006413P:translational initiation
GO:0003743F:translation initiation factor activity
GO:0016251F:RNA polymerase II general transcription initiation factor activity
GO:0000124C:SAGA complex
GO:0005669C:transcription factor TFIID complex
Transcription Regulation
SRR953582_primary_scf7180002065729_1-1377
Len: 1,376 bp
Hits: 20
E-val: 9.50E-14
Sim: 85.29%
 XP_016353863.1 centrosomal protein of 120 kDa-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0010825P:positive regulation of centrosome duplication
GO:0021987P:cerebral cortex development
GO:0022008P:neurogenesis
GO:0022027P:interkinetic nuclear migration
GO:0030953P:astral microtubule organization
GO:0045724P:positive regulation of cilium assembly
GO:1903724P:positive regulation of centriole elongation
GO:1904951P:positive regulation of establishment of protein localization
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
GO:0005813C:centrosome
GO:0005814C:centriole
Transcription Regulation
SRR953582_primary_scf7180002069572_355-1515
Len: 1,160 bp
Hits: 20
E-val: 2.90E-40
Sim: 98.46%
 XP_018960452.1 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0003712F:transcription coregulator activity
GO:0016592C:mediator complex
Transcription Regulation
SRR953582_primary_scf7180002091026_447-854
Len: 407 bp
Hits: 20
E-val: 4.70E-78
Sim: 88.53%
 XP_018958998.1 homeobox protein XHOX-3-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0009953P:dorsal/ventral pattern formation
GO:0036342P:post-anal tail morphogenesis
GO:0042661P:regulation of mesodermal cell fate specification
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002095060_1-711
Len: 710 bp
Hits: 20
E-val: 1.60E-44
Sim: 56.52%
 XP_018926490.1 synaptic functional regulator FMR1-like
GO:0007420P:brain development
GO:0010608P:post-transcriptional regulation of gene expression
GO:0014036P:neural crest cell fate specification
GO:0021905P:forebrain-midbrain boundary formation
GO:0048755P:branching morphogenesis of a nerve
GO:0050890P:cognition
GO:0051216P:cartilage development
GO:0061001P:regulation of dendritic spine morphogenesis
GO:0090365P:regulation of mRNA modification
GO:0005634C:nucleus
GO:0043005C:neuron projection
GO:0043232C:intracellular membraneless organelle
Transcription Regulation
SRR953582_primary_scf7180002147873_223-6757
Len: 6,534 bp
Hits: 20
E-val: 0
Sim: 80.08%
 XP_018971761.1 probable helicase senataxin
GO:0006369P:termination of RNA polymerase II transcription
GO:0001147F:transcription termination site sequence-specific DNA binding
GO:0004386F:helicase activity
GO:0016604C:nuclear body
Transcription Regulation
SRR953582_primary_scf7180002147942_1497-4813
Len: 3,316 bp
Hits: 20
E-val: 0
Sim: 76.19%
 XP_018980872.1 LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2B-like
GO:0006338P:chromatin remodeling
GO:0032259P:methylation
GO:0045893P:positive regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0008270F:zinc ion binding
GO:0140999F:histone H3K4 trimethyltransferase activity
GO:0035097C:histone methyltransferase complex
Transcription Regulation
SRR953582_primary_scf7180002149419_502-3032
Len: 2,530 bp
Hits: 20
E-val: 2.60E-126
Sim: 91.31%
 XP_018966326.1 oligodendrocyte transcription factor 1-like
GO:0007423P:sensory organ development
GO:0014003P:oligodendrocyte development
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0061564P:axon development
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046983F:protein dimerization activity
GO:0070888F:E-box binding
GO:0005634C:nucleus
Transcription Regulation