Gene Function: Transcription Regulation

Functional and statistical data for significant genes

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GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR953582_primary_scf7180002159912_1-521
Len: 520 bp
Hits: 20
E-val: 1.50E-47
Sim: 96.55%
 XP_018931471.1 nucleus accumbens-associated protein 1-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
Transcription Regulation
SRR953582_primary_scf7180002159944_1-980
Len: 979 bp
Hits: 20
E-val: 4.40E-21
Sim: 97.65%
 XP_026062324.1thymocyte selection-associated high mobility group box protein TOX-like isoform X2
GO:0002521P:leukocyte differentiation
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0031490F:chromatin DNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002160195_759-3507
Len: 2,748 bp
Hits: 20
E-val: 5.00E-14
Sim: 94.62%
 EGW08868.1Cyclic AMP-responsive element-binding protein 5
GO:0006355P:regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0003700F:DNA-binding transcription factor activity
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002160469_397-2333
Len: 1,936 bp
Hits: 20
E-val: 0
Sim: 83.65%
 XP_018962196.1 zinc fingers and homeoboxes protein 1-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677F:DNA binding
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002160567_922-2197
Len: 1,275 bp
Hits: 20
E-val: 8.20E-44
Sim: 93.79%
 XP_026141808.1phosphatidate phosphatase LPIN1-like isoform X3
GO:0009062P:fatty acid catabolic process
GO:0019432P:triglyceride biosynthetic process
GO:0032869P:cellular response to insulin stimulus
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003713F:transcription coactivator activity
GO:0008195F:phosphatidate phosphatase activity
GO:0005634C:nucleus
GO:0005741C:mitochondrial outer membrane
Transcription Regulation
SRR953582_primary_scf7180002160987_779-2339
Len: 1,560 bp
Hits: 20
E-val: 4.20E-42
Sim: 99.28%
 XP_010785743.1 transcription initiation factor IIB-like
GO:0001174P:transcriptional start site selection at RNA polymerase II promoter
GO:0006338P:chromatin remodeling
GO:0006413P:translational initiation
GO:0051123P:RNA polymerase II preinitiation complex assembly
GO:1990114P:RNA polymerase II core complex assembly
GO:0000979F:RNA polymerase II core promoter sequence-specific DNA binding
GO:0003743F:translation initiation factor activity
GO:0008270F:zinc ion binding
GO:0016251F:RNA polymerase II general transcription initiation factor activity
GO:0017025F:TBP-class protein binding
GO:0032931F:histone H3K56 acetyltransferase activity
GO:0036408F:histone H3K14 acetyltransferase activity
GO:0043992F:histone H3K9 acetyltransferase activity
GO:0043993F:histone H3K18 acetyltransferase activity
GO:0043994F:histone H3K23 acetyltransferase activity
GO:0043995F:histone H4K5 acetyltransferase activity
GO:0043996F:histone H4K8 acetyltransferase activity
GO:0043997F:histone H4K12 acetyltransferase activity
GO:0043999F:histone H2AK5 acetyltransferase activity
GO:0044012F:histone H2AK9 acetyltransferase activity
GO:0044014F:histone H2BK5 acetyltransferase activity
GO:0044015F:histone H2BK12 acetyltransferase activity
GO:0044016F:histone H3K4 acetyltransferase activity
GO:0044017F:histone H3K27 acetyltransferase activity
GO:0044018F:histone H3K36 acetyltransferase activity
GO:0046972F:histone H4K16 acetyltransferase activity
GO:0140908F:histone H3K122 acetyltransferase activity
GO:0005634C:nucleus
GO:0005694C:chromosome
GO:0097550C:transcription preinitiation complex
Transcription Regulation
SRR953582_primary_scf7180002161295_522-2277
Len: 1,755 bp
Hits: 20
E-val: 7.80E-45
Sim: 81.79%
 XP_018969914.1 coiled-coil and C2 domain-containing protein 1A
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0060271P:cilium assembly
GO:0061371P:determination of heart left/right asymmetry
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001227F:DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002161338_1-2556
Len: 2,555 bp
Hits: 20
E-val: 1.90E-95
Sim: 99.92%
 XP_021333010.1nuclear factor 1 X-type-like isoform X3
GO:0006260P:DNA replication
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0045893P:positive regulation of DNA-templated transcription
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002162410_1462-2337
Len: 875 bp
Hits: 20
E-val: 4.30E-153
Sim: 91.09%
 XP_018936655.1 homeobox protein unc-4 homolog isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007399P:nervous system development
GO:0030154P:cell differentiation
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:1990837F:sequence-specific double-stranded DNA binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002162875_1-2422
Len: 2,421 bp
Hits: 20
E-val: 2.10E-40
Sim: 82.02%
 XP_018969442.1 LOW QUALITY PROTEIN: cell division cycle and apoptosis regulator protein 1-like
GO:0006355P:regulation of DNA-templated transcription
GO:0016226P:iron-sulfur cluster assembly
GO:0051301P:cell division
GO:0005506F:iron ion binding
GO:0051536F:iron-sulfur cluster binding
GO:0005634C:nucleus
GO:0005737C:cytoplasm
Transcription Regulation
SRR953582_primary_scf7180002162994_1-2426
Len: 2,425 bp
Hits: 20
E-val: 1.60E-16
Sim: 92.01%
 XP_026067585.1ruvB-like 2
GO:0000492P:box C/D snoRNP assembly
GO:0003351P:epithelial cilium movement involved in extracellular fluid movement
GO:0006281P:DNA repair
GO:0006310P:DNA recombination
GO:0006338P:chromatin remodeling
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0044458P:motile cilium assembly
GO:0045892P:negative regulation of DNA-templated transcription
GO:0048565P:digestive tract development
GO:0060420P:regulation of heart growth
GO:0070286P:axonemal dynein complex assembly
GO:0005524F:ATP binding
GO:0009378F:four-way junction helicase activity
GO:0016887F:ATP hydrolysis activity
GO:0036121F:double-stranded DNA helicase activity
GO:0061749F:forked DNA-dependent helicase activity
GO:1990518F:single-stranded 3'-5' DNA helicase activity
GO:0000812C:Swr1 complex
GO:0005576C:extracellular region
GO:0031011C:Ino80 complex
GO:0035267C:NuA4 histone acetyltransferase complex
GO:0071339C:MLL1 complex
GO:0097255C:R2TP complex
GO:0120293C:dynein axonemal particle
Transcription Regulation
SRR953582_primary_scf7180002163732_1-543
Len: 542 bp
Hits: 20
E-val: 7.70E-60
Sim: 74.21%
 XP_018958275.1 homeobox protein MSX-2-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0043049P:otic placode formation
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002163910_1-2636
Len: 2,635 bp
Hits: 20
E-val: 1.50E-39
Sim: 99.56%
 ROK76664.1ER lumen protein-retaining receptor 2
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0006621P:protein retention in ER lumen
GO:0015031P:protein transport
GO:0016192P:vesicle-mediated transport
GO:0019369P:arachidonate metabolic process
GO:0022008P:neurogenesis
GO:0046340P:diacylglycerol catabolic process
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0004806F:triacylglycerol lipase activity
GO:0008270F:zinc ion binding
GO:0043565F:sequence-specific DNA binding
GO:0046923F:ER retention sequence binding
GO:0000139C:Golgi membrane
GO:0005634C:nucleus
GO:0005789C:endoplasmic reticulum membrane
GO:0005886C:plasma membrane
GO:0030663C:COPI-coated vesicle membrane
Transcription Regulation
SRR953582_primary_scf7180002164174_1-2477
Len: 2,476 bp
Hits: 20
E-val: 3.00E-34
Sim: 53.25%
 XP_018959997.1 LOW QUALITY PROTEIN: general transcription factor II-I repeat domain-containing protein 1-like
GO:0006355P:regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0003700F:DNA-binding transcription factor activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002164192_72-539
Len: 467 bp
Hits: 20
E-val: 3.20E-78
Sim: 75.4%
 XP_016324103.1 zinc finger BED domain-containing protein 1-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0003677F:DNA binding
GO:0008270F:zinc ion binding
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002164525_814-2792
Len: 1,978 bp
Hits: 20
E-val: 1.70E-16
Sim: 96.59%
 RXN03089.1dnaJ -like protein
GO:0006355P:regulation of DNA-templated transcription
GO:0042407P:cristae formation
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
GO:0005739C:mitochondrion
GO:0016020C:membrane
Transcription Regulation
SRR953582_primary_scf7180002164690_964-2360
Len: 1,396 bp
Hits: 20
E-val: 4.00E-36
Sim: 90.15%
 XP_018971937.1 zinc finger and BTB domain-containing protein 47-like isoform X1
GO:0007165P:signal transduction
GO:0035630P:bone mineralization involved in bone maturation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001228F:DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0016791F:phosphatase activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002166281_1-2147
Len: 2,146 bp
Hits: 20
E-val: 6.70E-30
Sim: 92.64%
 XP_026138530.1neuronal PAS domain-containing protein 1-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002166352_568-1698
Len: 1,130 bp
Hits: 20
E-val: 1.60E-136
Sim: 72.62%
 XP_018938723.1 transcription factor Sp5-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
Transcription Regulation
SRR953582_primary_scf7180002166500_748-2272
Len: 1,524 bp
Hits: 20
E-val: 1.80E-21
Sim: 95%
 XP_018952080.1 failed axon connections homolog, partial
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0006813P:potassium ion transport
GO:0006814P:sodium ion transport
GO:0051726P:regulation of cell cycle
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
GO:0005667C:transcription regulator complex
GO:0005890C:sodium:potassium-exchanging ATPase complex
Transcription Regulation
SRR953582_primary_scf7180002166911_1-1931
Len: 1,930 bp
Hits: 20
E-val: 5.60E-44
Sim: 73.01%
 XP_016134842.1 transcription factor E2F7
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0001946P:lymphangiogenesis
GO:0002040P:sprouting angiogenesis
GO:0008045P:motor neuron axon guidance
GO:0030330P:DNA damage response, signal transduction by p53 class mediator
GO:0032466P:negative regulation of cytokinesis
GO:0032877P:positive regulation of DNA endoreduplication
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0060718P:chorionic trophoblast cell differentiation
GO:0070365P:hepatocyte differentiation
GO:2000134P:negative regulation of G1/S transition of mitotic cell cycle
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001217F:DNA-binding transcription repressor activity
GO:0005515F:protein binding
GO:0090575C:RNA polymerase II transcription regulator complex
Transcription Regulation
SRR953582_primary_scf7180002168149_606-2175
Len: 1,569 bp
Hits: 20
E-val: 3.30E-26
Sim: 85.79%
 XP_018942232.1 homeobox protein Mohawk-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007517P:muscle organ development
GO:0048468P:cell development
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002168529_1-2002
Len: 2,001 bp
Hits: 20
E-val: 4.70E-54
Sim: 60.88%
 XP_018920347.1 DNA-directed RNA polymerase III subunit RPC4-like
GO:0006278P:RNA-templated DNA biosynthetic process
GO:0006383P:transcription by RNA polymerase III
GO:0042797P:tRNA transcription by RNA polymerase III
GO:0003677F:DNA binding
GO:0003824F:catalytic activity
GO:0003964F:RNA-directed DNA polymerase activity
GO:0000428C:DNA-directed RNA polymerase complex
GO:0005666C:RNA polymerase III complex
Transcription Regulation
SRR953582_primary_scf7180002169104_1709-2518
Len: 809 bp
Hits: 20
E-val: 1.50E-19
Sim: 96.62%
 CDQ65265.1unnamed protein product
GO:0034314P:Arp2/3 complex-mediated actin nucleation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:1905168P:positive regulation of double-strand break repair via homologous recombination
GO:0005524F:ATP binding
GO:0051015F:actin filament binding
GO:0005634C:nucleus
GO:0005885C:Arp2/3 protein complex
GO:0005938C:cell cortex
GO:0035861C:site of double-strand break
GO:0042995C:cell projection
Transcription Regulation
SRR953582_primary_scf7180002169454_1-1294
Len: 1,293 bp
Hits: 20
E-val: 4.70E-31
Sim: 80.05%
 XP_026096804.1AT-rich interactive domain-containing protein 1A-like isoform X2
GO:0006338P:chromatin remodeling
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0045893P:positive regulation of DNA-templated transcription
GO:0003677F:DNA binding
GO:0031491F:nucleosome binding
GO:0005654C:nucleoplasm
GO:0016514C:SWI/SNF complex
GO:0035060C:brahma complex
GO:0071565C:nBAF complex
Transcription Regulation