Gene Function: Transcription Regulation

Functional and statistical data for significant genes

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Showing 1,388 results (Page 52 of 56)
GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR953582_primary_scf7180002169701_662-1832
Len: 1,170 bp
Hits: 20
E-val: 1.10E-34
Sim: 97.6%
 XP_026052925.1E3 ubiquitin-protein ligase UHRF1
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0001889P:liver development
GO:0002088P:lens development in camera-type eye
GO:0006511P:ubiquitin-dependent protein catabolic process
GO:0006954P:inflammatory response
GO:0016567P:protein ubiquitination
GO:0031100P:animal organ regeneration
GO:0031507P:heterochromatin formation
GO:0044027P:negative regulation of gene expression via chromosomal CpG island methylation
GO:0060729P:intestinal epithelial structure maintenance
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0042393F:histone binding
GO:0044729F:hemi-methylated DNA-binding
GO:0061630F:ubiquitin protein ligase activity
GO:0000791C:euchromatin
GO:0000792C:heterochromatin
GO:0005634C:nucleus
GO:0005657C:replication fork
GO:0005737C:cytoplasm
Transcription Regulation
SRR953582_primary_scf7180002170288_1131-1431
Len: 300 bp
Hits: 20
E-val: 2.90E-24
Sim: 100%
 XP_018929327.1 LOW QUALITY PROTEIN: transformation/transcription domain-associated protein-like
GO:0001964P:startle response
GO:0006281P:DNA repair
GO:0006355P:regulation of DNA-templated transcription
GO:0035675P:neuromast hair cell development
GO:0042481P:regulation of odontogenesis
GO:0060536P:cartilage morphogenesis
GO:0140861P:DNA repair-dependent chromatin remodeling
GO:0000124C:SAGA complex
GO:0005634C:nucleus
GO:0035267C:NuA4 histone acetyltransferase complex
Transcription Regulation
SRR953582_primary_scf7180002170864_1071-1655
Len: 584 bp
Hits: 20
E-val: 1.30E-100
Sim: 84.21%
 XP_018945246.1 actin-binding Rho-activating protein-like
GO:0007507P:heart development
GO:0008015P:blood circulation
GO:0035025P:positive regulation of Rho protein signal transduction
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003779F:actin binding
GO:0030017C:sarcomere
Transcription Regulation
SRR953582_primary_scf7180002171292_813-2015
Len: 1,202 bp
Hits: 20
E-val: 3.90E-19
Sim: 96.94%
 XP_018918914.1 histone-lysine N-methyltransferase EHMT1-like
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0006338P:chromatin remodeling
GO:0032259P:methylation
GO:0002039F:p53 binding
GO:0008270F:zinc ion binding
GO:0046974F:histone H3K9 methyltransferase activity
GO:0000785C:chromatin
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002171970_936-1972
Len: 1,036 bp
Hits: 20
E-val: 2.60E-88
Sim: 98.04%
 XP_018980320.1 homeobox protein Hox-A1a
GO:0003187P:ventriculo bulbo valve morphogenesis
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002172062_1-833
Len: 832 bp
Hits: 20
E-val: 3.50E-80
Sim: 80.81%
 RXN15635.1zinc finger BED domain-containing 1-like protein
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0016874F:ligase activity
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
GO:0016020C:membrane
Transcription Regulation
SRR953582_primary_scf7180002172855_538-1923
Len: 1,385 bp
Hits: 20
E-val: 3.80E-26
Sim: 60.94%
 XP_018938766.1 cyclic AMP-dependent transcription factor ATF-1-like
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:1990589C:ATF4-CREB1 transcription factor complex
Transcription Regulation
SRR953582_primary_scf7180002173064_1-1847
Len: 1,846 bp
Hits: 20
E-val: 1.00E-34
Sim: 64.22%
 XP_018964192.1 histone acetyltransferase KAT2A-like
GO:0007507P:heart development
GO:0040029P:epigenetic regulation of gene expression
GO:0043543P:protein acylation
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0050863P:regulation of T cell activation
GO:0060173P:limb development
GO:0060349P:bone morphogenesis
GO:0061035P:regulation of cartilage development
GO:1903010P:regulation of bone development
GO:0032931F:histone H3K56 acetyltransferase activity
GO:0036408F:histone H3K14 acetyltransferase activity
GO:0043992F:histone H3K9 acetyltransferase activity
GO:0043993F:histone H3K18 acetyltransferase activity
GO:0043994F:histone H3K23 acetyltransferase activity
GO:0043995F:histone H4K5 acetyltransferase activity
GO:0043996F:histone H4K8 acetyltransferase activity
GO:0043997F:histone H4K12 acetyltransferase activity
GO:0043999F:histone H2AK5 acetyltransferase activity
GO:0044012F:histone H2AK9 acetyltransferase activity
GO:0044014F:histone H2BK5 acetyltransferase activity
GO:0044015F:histone H2BK12 acetyltransferase activity
GO:0044016F:histone H3K4 acetyltransferase activity
GO:0044017F:histone H3K27 acetyltransferase activity
GO:0044018F:histone H3K36 acetyltransferase activity
GO:0046972F:histone H4K16 acetyltransferase activity
GO:0106228F:peptide glutaryltransferase activity
GO:0140908F:histone H3K122 acetyltransferase activity
GO:0005634C:nucleus
GO:0005737C:cytoplasm
GO:0005813C:centrosome
GO:0140672C:ATAC complex
Transcription Regulation
SRR953582_primary_scf7180002173408_1-1463
Len: 1,462 bp
Hits: 20
E-val: 2.90E-16
Sim: 93.6%
 XP_026144538.1nuclear transcription factor Y subunit gamma-like isoform X3
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0060041P:retina development in camera-type eye
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001228F:DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0046982F:protein heterodimerization activity
GO:0016602C:CCAAT-binding factor complex
Transcription Regulation
SRR953582_primary_scf7180002174984_525-1589
Len: 1,064 bp
Hits: 20
E-val: 7.50E-200
Sim: 88.82%
 XP_018975748.1 forkhead box protein E1
GO:0001755P:neural crest cell migration
GO:0003419P:growth plate cartilage chondrocyte proliferation
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0048703P:embryonic viscerocranium morphogenesis
GO:0061035P:regulation of cartilage development
GO:1903010P:regulation of bone development
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002176732_448-1539
Len: 1,091 bp
Hits: 20
E-val: 1.40E-196
Sim: 97.08%
 XP_018927591.1 zinc finger and BTB domain-containing protein 44-like isoform X1
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002178595_1-1480
Len: 1,479 bp
Hits: 20
E-val: 1.60E-30
Sim: 75.93%
 BAE46429.1ORF2-encoded protein, partial
GO:0006278P:RNA-templated DNA biosynthetic process
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0007399P:nervous system development
GO:0048468P:cell development
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003964F:RNA-directed DNA polymerase activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002179182_1-1616
Len: 1,615 bp
Hits: 20
E-val: 1.80E-213
Sim: 79.34%
 RXN26556.1zinc finger and BTB domain-containing 25-like protein
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0001817P:regulation of cytokine production
GO:0002682P:regulation of immune system process
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001227F:DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005654C:nucleoplasm
Transcription Regulation
SRR953582_primary_scf7180002182241_1-1045
Len: 1,044 bp
Hits: 20
E-val: 5.50E-38
Sim: 89.35%
 XP_018938716.1 homeobox protein BarH-like 2
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002182939_1-1514
Len: 1,513 bp
Hits: 20
E-val: 7.00E-26
Sim: 94.32%
 ROL45416.1Lethal(3)malignant brain tumor-like protein 4
GO:0006325P:chromatin organization
GO:0045892P:negative regulation of DNA-templated transcription
GO:0003682F:chromatin binding
GO:0008270F:zinc ion binding
GO:0042393F:histone binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002183761_100-440
Len: 340 bp
Hits: 20
E-val: 1.10E-14
Sim: 98.08%
 XP_026058140.1peptidyl-prolyl cis-trans isomerase B-like isoform X2
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0006457P:protein folding
GO:0016018F:cyclosporin A binding
GO:0140839F:RNA polymerase II CTD heptapeptide repeat P3 isomerase activity
GO:0140840F:RNA polymerase II CTD heptapeptide repeat P6 isomerase activity
GO:0005788C:endoplasmic reticulum lumen
GO:0016020C:membrane
GO:0042470C:melanosome
Transcription Regulation
SRR953582_primary_scf7180002183832_1-1268
Len: 1,267 bp
Hits: 20
E-val: 1.10E-101
Sim: 55.04%
 XP_018940686.1 peroxisome proliferator-activated receptor delta-like
GO:0006355P:regulation of DNA-templated transcription
GO:0030154P:cell differentiation
GO:0050896P:response to stimulus
GO:0043565F:sequence-specific DNA binding
GO:0043229C:intracellular organelle
Transcription Regulation
SRR953582_primary_scf7180002184554_556-1331
Len: 775 bp
Hits: 20
E-val: 3.20E-43
Sim: 92.99%
 XP_016389451.1 transcription cofactor vestigial-like protein 4
GO:0045892P:negative regulation of DNA-templated transcription
GO:0048701P:embryonic cranial skeleton morphogenesis
GO:0060271P:cilium assembly
GO:0061371P:determination of heart left/right asymmetry
GO:0070121P:Kupffer's vesicle development
GO:0001223F:transcription coactivator binding
Transcription Regulation
SRR953582_primary_scf7180002185465_1-1635
Len: 1,634 bp
Hits: 20
E-val: 1.20E-31
Sim: 99.07%
 XP_016305899.1 myocyte-specific enhancer factor 2C-like
GO:0003143P:embryonic heart tube morphogenesis
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0055013P:cardiac muscle cell development
GO:0060914P:heart formation
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0042826F:histone deacetylase binding
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002186515_97-1251
Len: 1,154 bp
Hits: 19
E-val: 1.70E-157
Sim: 60.76%
 XP_018934945.1 putative zinc finger and SCAN domain-containing protein 5D
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0009913P:epidermal cell differentiation
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0010484F:histone H3 acetyltransferase activity
GO:0010485F:histone H4 acetyltransferase activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002187706_1-1285
Len: 1,284 bp
Hits: 20
E-val: 3.10E-43
Sim: 98.48%
 RXN22357.1Scm-like with four MBT domains 1
GO:0045892P:negative regulation of DNA-templated transcription
GO:0003682F:chromatin binding
GO:0003714F:transcription corepressor activity
GO:0042393F:histone binding
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002187804_174-1764
Len: 1,590 bp
Hits: 20
E-val: 1.00E-14
Sim: 97.68%
 XP_017159043.1 plexin domain-containing protein 2-like
GO:0000122P:negative regulation of transcription by RNA polymerase II
GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270F:zinc ion binding
GO:0005634C:nucleus
GO:0016020C:membrane
Transcription Regulation
SRR953582_primary_scf7180002188027_1-1071
Len: 1,070 bp
Hits: 20
E-val: 2.60E-19
Sim: 79.2%
 XP_016424420.1 phosphatidate phosphatase LPIN2-like
GO:0009062P:fatty acid catabolic process
GO:0019432P:triglyceride biosynthetic process
GO:0032869P:cellular response to insulin stimulus
GO:0045944P:positive regulation of transcription by RNA polymerase II
GO:0003713F:transcription coactivator activity
GO:0008195F:phosphatidate phosphatase activity
GO:0005634C:nucleus
Transcription Regulation
SRR953582_primary_scf7180002188535_308-814
Len: 506 bp
Hits: 20
E-val: 1.30E-72
Sim: 68.78%
 XP_018976343.1 tetratricopeptide repeat protein 21A-like
GO:0006355P:regulation of DNA-templated transcription
GO:0035721P:intraciliary retrograde transport
GO:0061512P:protein localization to cilium
GO:0003700F:DNA-binding transcription factor activity
GO:0005929C:cilium
GO:0030991C:intraciliary transport particle A
Transcription Regulation
SRR953582_primary_scf7180002189163_1-942
Len: 941 bp
Hits: 20
E-val: 7.70E-23
Sim: 99.74%
 XP_018940664.1 transcription factor EB
GO:0006357P:regulation of transcription by RNA polymerase II
GO:0006959P:humoral immune response
GO:0022010P:central nervous system myelination
GO:0045893P:positive regulation of DNA-templated transcription
GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046983F:protein dimerization activity
GO:0005634C:nucleus
GO:0005737C:cytoplasm
Transcription Regulation