Functional and statistical data for significant genes
| Sequence & Stats | Description | GO Annotations | Gene Function |
|---|---|---|---|
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SRR924338_primary_scf7180002781198_411-993
Len: 582 bp
Hits: 20
E-val: 4.90E-44
Sim: 99.32%
|
XP_016341936.1 collagen alpha-2(IV) chain-like |
GO:0030198P:extracellular matrix organization GO:0030020F:extracellular matrix structural constituent conferring tensile strength GO:0005587C:collagen type IV trimer GO:0005615C:extracellular space |
Other
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SRR924338_primary_scf7180002781388_1-1159
Len: 1,158 bp
Hits: 20
E-val: 4.00E-82
Sim: 58.05%
|
RXN10998.1inositol 1,4,5-trisphosphate receptor type 2 |
GO:0009987P:cellular process GO:0005488F:binding GO:0005783C:endoplasmic reticulum GO:0031090C:organelle membrane GO:0031410C:cytoplasmic vesicle |
Other
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SRR924338_primary_scf7180002781453_1-1092
Len: 1,091 bp
Hits: 20
E-val: 1.10E-44
Sim: 58.52%
|
XP_026051748.1Bardet-Biedl syndrome 1 protein |
GO:0001947P:heart looping GO:0003341P:cilium movement GO:0008593P:regulation of Notch signaling pathway GO:0032402P:melanosome transport GO:0033339P:pectoral fin development GO:0035845P:photoreceptor cell outer segment organization GO:0042632P:cholesterol homeostasis GO:0050908P:detection of light stimulus involved in visual perception GO:0060027P:convergent extension involved in gastrulation GO:0060028P:convergent extension involved in axis elongation GO:0060271P:cilium assembly GO:0061469P:regulation of type B pancreatic cell proliferation GO:0070121P:Kupffer's vesicle development GO:0043226C:organelle |
Cell Signaling
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SRR924338_primary_scf7180002781597_1-110
Len: 109 bp
Hits: 20
E-val: 4.30E-10
Sim: 98.19%
|
XP_018969052.1 adhesion G protein-coupled receptor L2-like |
GO:0007166P:cell surface receptor signaling pathway GO:0007189P:adenylate cyclase-activating G protein-coupled receptor signaling pathway GO:0004930F:G protein-coupled receptor activity GO:0030246F:carbohydrate binding GO:0005886C:plasma membrane |
Cell Signaling
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SRR924338_primary_scf7180002781600_1-812
Len: 811 bp
Hits: 20
E-val: 1.10E-49
Sim: 63.54%
|
XP_026091402.1helicase ARIP4 isoform X1 |
GO:0006325P:chromatin organization GO:0140640F:catalytic activity, acting on a nucleic acid GO:0140657F:ATP-dependent activity |
DNA Metabolism
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SRR924338_primary_scf7180002781665_1-1191
Len: 1,190 bp
Hits: 20
E-val: 3.10E-45
Sim: 56.42%
|
XP_018918614.1 LOW QUALITY PROTEIN: multidrug resistance-associated protein 1-like |
GO:0006869P:lipid transport GO:0034775P:glutathione transmembrane transport GO:0042908P:xenobiotic transport GO:0055085P:transmembrane transport GO:0005524F:ATP binding GO:0008559F:ABC-type xenobiotic transporter activity GO:0016787F:hydrolase activity GO:0016887F:ATP hydrolysis activity GO:0034634F:glutathione transmembrane transporter activity GO:0140359F:ABC-type transporter activity GO:0005886C:plasma membrane GO:0016020C:membrane GO:0016323C:basolateral plasma membrane |
Membrane Transport
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SRR924338_primary_scf7180002781860_1-1363
Len: 1,362 bp
Hits: 20
E-val: 1.20E-24
Sim: 99.36%
|
XP_026081825.1TNF receptor-associated factor 4-like |
GO:0002072P:optic cup morphogenesis involved in camera-type eye development GO:0003405P:optic vesicle elongation GO:0007166P:cell surface receptor signaling pathway GO:0042981P:regulation of apoptotic process GO:0043122P:regulation of canonical NF-kappaB signal transduction GO:0045198P:establishment of epithelial cell apical/basal polarity GO:0046330P:positive regulation of JNK cascade GO:0005164F:tumor necrosis factor receptor binding GO:0008270F:zinc ion binding GO:0031625F:ubiquitin protein ligase binding GO:0035591F:signaling adaptor activity GO:0005737C:cytoplasm |
Cell Signaling
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SRR924338_primary_scf7180002782368_1-647
Len: 646 bp
Hits: 20
E-val: 1.00E-26
Sim: 97.71%
|
ROJ29254.1Protein Wnt-4 |
GO:0030182P:neuron differentiation GO:0045165P:cell fate commitment GO:0048513P:animal organ development GO:0060070P:canonical Wnt signaling pathway GO:0005109F:frizzled binding GO:0005125F:cytokine activity GO:0005615C:extracellular space GO:0016020C:membrane |
Cell Signaling
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SRR924338_primary_scf7180002782448_1-683
Len: 682 bp
Hits: 20
E-val: 3.20E-18
Sim: 97.6%
|
XP_026136897.1elongation factor 1-gamma |
GO:0006351P:DNA-templated transcription GO:0006414P:translational elongation GO:0003746F:translation elongation factor activity GO:0000428C:DNA-directed RNA polymerase complex GO:0005634C:nucleus GO:0005737C:cytoplasm |
Transcription Regulation
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SRR924338_primary_scf7180002782570_1-547
Len: 546 bp
Hits: 20
E-val: 3.80E-30
Sim: 93%
|
XP_026145519.1ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X2 |
GO:0006338P:chromatin remodeling GO:0006508P:proteolysis GO:0071108P:protein K48-linked deubiquitination GO:0004843F:cysteine-type deubiquitinase activity GO:0016807F:cysteine-type carboxypeptidase activity GO:0036435F:K48-linked polyubiquitin modification-dependent protein binding GO:0140934F:histone deubiquitinase activity GO:1990380F:K48-linked deubiquitinase activity GO:0005829C:cytosol GO:0071944C:cell periphery |
Protein Degradation
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SRR924338_primary_scf7180002783236_1-1336
Len: 1,335 bp
Hits: 20
E-val: 1.40E-65
Sim: 70.58%
|
XP_026051181.1fructose-bisphosphate aldolase C |
GO:0030388P:fructose 1,6-bisphosphate metabolic process GO:0004332F:fructose-bisphosphate aldolase activity |
Metabolism
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SRR924338_primary_scf7180002783328_102-974
Len: 872 bp
Hits: 20
E-val: 2.60E-150
Sim: 86.61%
|
XP_018920389.1 prostaglandin E2 receptor EP1 subtype-like |
GO:0006954P:inflammatory response GO:0007189P:adenylate cyclase-activating G protein-coupled receptor signaling pathway GO:0007204P:positive regulation of cytosolic calcium ion concentration GO:0051607P:defense response to virus GO:0003677F:DNA binding GO:0003725F:double-stranded RNA binding GO:0003727F:single-stranded RNA binding GO:0004957F:prostaglandin E receptor activity GO:0004960F:thromboxane receptor activity GO:0005737C:cytoplasm GO:0005886C:plasma membrane GO:0071011C:precatalytic spliceosome |
Cell Signaling
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SRR924338_primary_scf7180002783857_1-566
Len: 565 bp
Hits: 20
E-val: 9.50E-61
Sim: 86.93%
|
XP_018981271.1 dehydrodolichyl diphosphate synthase complex subunit NUS1 |
GO:0002040P:sprouting angiogenesis GO:0032367P:intracellular cholesterol transport GO:0036269P:swimming behavior GO:0045547F:ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity GO:0005789C:endoplasmic reticulum membrane GO:1904423C:dehydrodolichyl diphosphate synthase complex |
Other
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SRR924338_primary_scf7180002784103_1-997
Len: 996 bp
Hits: 20
E-val: 9.60E-24
Sim: 96.45%
|
XP_026074973.1mitogen-activated protein kinase kinase kinase 1-like isoform X2 |
GO:0000165P:MAPK cascade GO:0004709F:MAP kinase kinase kinase activity GO:0005524F:ATP binding GO:0008270F:zinc ion binding GO:0005737C:cytoplasm |
Signal Transduction
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SRR924338_primary_scf7180002785542_1-1090
Len: 1,089 bp
Hits: 20
E-val: 3.30E-25
Sim: 86.13%
|
XP_018938499.1 mesothelin-like protein |
Other
|
|
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SRR924338_primary_scf7180002785684_1-219
Len: 218 bp
Hits: 20
E-val: 3.70E-21
Sim: 100%
|
AAY85272.1MR, partial |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0030518P:nuclear receptor-mediated steroid hormone signaling pathway GO:0033555P:multicellular organismal response to stress GO:0071387P:cellular response to cortisol stimulus GO:0003707F:nuclear steroid receptor activity GO:0008270F:zinc ion binding GO:0034056F:estrogen response element binding GO:1990239F:steroid hormone binding GO:0000785C:chromatin GO:0005634C:nucleus |
Cell Signaling
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SRR924338_primary_scf7180002786129_1-1109
Len: 1,108 bp
Hits: 20
E-val: 7.40E-17
Sim: 98.65%
|
XP_026065221.1putative adenosylhomocysteinase 3 isoform X3 |
GO:0006730P:one-carbon metabolic process GO:0033353P:S-adenosylmethionine cycle GO:0004013F:adenosylhomocysteinase activity GO:0005829C:cytosol |
Metabolism
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SRR924338_primary_scf7180002786596_1-948
Len: 947 bp
Hits: 20
E-val: 5.90E-31
Sim: 96.15%
|
XP_026146017.1CAD protein-like isoform X2 |
GO:0006207P:'de novo' pyrimidine nucleobase biosynthetic process GO:0006526P:L-arginine biosynthetic process GO:0006541P:glutamine metabolic process GO:0044205P:'de novo' UMP biosynthetic process GO:0004070F:aspartate carbamoyltransferase activity GO:0004088F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity GO:0004151F:dihydroorotase activity GO:0005524F:ATP binding GO:0016597F:amino acid binding GO:0046872F:metal ion binding GO:0005951C:carbamoyl-phosphate synthase complex |
Metabolism
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SRR924338_primary_scf7180002787276_1-863
Len: 862 bp
Hits: 20
E-val: 1.30E-40
Sim: 67.93%
|
RXN21155.1cell division cycle 27 -like protein |
GO:0019538P:protein metabolic process GO:0005622C:intracellular anatomical structure |
Metabolism
|
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SRR924338_primary_scf7180002788883_256-815
Len: 559 bp
Hits: 20
E-val: 1.50E-29
Sim: 92.67%
|
XP_016111804.1 UPF0160 protein MYG1, mitochondrial-like |
GO:0005634C:nucleus GO:0005737C:cytoplasm |
Other
|
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SRR924338_primary_scf7180002788915_1-769
Len: 768 bp
Hits: 20
E-val: 6.80E-110
Sim: 94.37%
|
XP_018956943.1 D(4) dopamine receptor-like |
GO:0001963P:synaptic transmission, dopaminergic GO:0007195P:adenylate cyclase-inhibiting dopamine receptor signaling pathway GO:0014059P:regulation of dopamine secretion GO:0021514P:ventral spinal cord interneuron differentiation GO:0021520P:spinal cord motor neuron cell fate specification GO:0043266P:regulation of potassium ion transport GO:0051481P:negative regulation of cytosolic calcium ion concentration GO:0051967P:negative regulation of synaptic transmission, glutamatergic GO:0060158P:phospholipase C-activating dopamine receptor signaling pathway GO:0071881P:adenylate cyclase-inhibiting adrenergic receptor signaling pathway GO:0001591F:dopamine neurotransmitter receptor activity, coupled via Gi/Go GO:0004938F:alpha2-adrenergic receptor activity GO:0005886C:plasma membrane GO:0045202C:synapse |
Cell Signaling
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SRR924338_primary_scf7180002788926_1-673
Len: 672 bp
Hits: 20
E-val: 2.80E-27
Sim: 91.78%
|
RXN37202.1solute carrier organic anion transporter family member 1C1-like isoform X1 |
GO:0006811P:monoatomic ion transport GO:0043252P:sodium-independent organic anion transport GO:0055085P:transmembrane transport GO:0022857F:transmembrane transporter activity GO:0016323C:basolateral plasma membrane |
Ion Transport
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SRR924338_primary_scf7180002789505_1-935
Len: 934 bp
Hits: 20
E-val: 5.30E-24
Sim: 68.04%
|
XP_026090476.1histone-lysine N-methyltransferase EHMT1-like isoform X1 |
GO:0009987P:cellular process GO:0042054F:histone methyltransferase activity GO:0043229C:intracellular organelle |
Other
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SRR924338_primary_scf7180002790694_1-676
Len: 675 bp
Hits: 20
E-val: 3.60E-14
Sim: 96.05%
|
CAF92678.1unnamed protein product, partial |
GO:0007268P:chemical synaptic transmission GO:0045197P:establishment or maintenance of epithelial cell apical/basal polarity GO:0097113P:AMPA glutamate receptor clustering GO:0098609P:cell-cell adhesion GO:0098970P:postsynaptic neurotransmitter receptor diffusion trapping GO:0019901F:protein kinase binding GO:0035255F:ionotropic glutamate receptor binding GO:0016323C:basolateral plasma membrane GO:0031594C:neuromuscular junction GO:0043005C:neuron projection GO:0098839C:postsynaptic density membrane |
Signal Transduction
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SRR924338_primary_scf7180002793390_309-684
Len: 375 bp
Hits: 20
E-val: 2.60E-22
Sim: 91.55%
|
XP_018928982.1 hemoglobin cathodic subunit beta-like |
GO:0010508P:positive regulation of autophagy GO:0015671P:oxygen transport GO:0034198P:cellular response to amino acid starvation GO:0042744P:hydrogen peroxide catabolic process GO:0098869P:cellular oxidant detoxification GO:1904262P:negative regulation of TORC1 signaling GO:0004601F:peroxidase activity GO:0005344F:oxygen carrier activity GO:0019825F:oxygen binding GO:0020037F:heme binding GO:0031720F:haptoglobin binding GO:0043177F:organic acid binding GO:0046872F:metal ion binding GO:0005764C:lysosome GO:0005833C:hemoglobin complex GO:0031838C:haptoglobin-hemoglobin complex GO:0072562C:blood microparticle GO:1990130C:GATOR1 complex |
Cell Signaling
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