Functional and statistical data for significant genes
| Sequence & Stats | Description | GO Annotations | Gene Function |
|---|---|---|---|
|
SRR941867_primary_scf7180002206714_1-594
Len: 593 bp
Hits: 20
E-val: 4.80E-23
Sim: 99.74%
|
XP_016334105.1 thyroid hormone receptor beta-like, partial |
GO:0000122P:negative regulation of transcription by RNA polymerase II GO:0002154P:thyroid hormone receptor signaling pathway GO:0042671P:retinal cone cell fate determination GO:0045944P:positive regulation of transcription by RNA polymerase II GO:0046549P:retinal cone cell development GO:0048384P:retinoic acid receptor signaling pathway GO:0048839P:inner ear development GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0004879F:nuclear receptor activity GO:0005515F:protein binding GO:0008270F:zinc ion binding GO:0070324F:thyroid hormone binding GO:0090575C:RNA polymerase II transcription regulator complex |
Cell Signaling
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SRR941867_primary_scf7180002206823_427-1596
Len: 1,169 bp
Hits: 20
E-val: 2.50E-23
Sim: 93.35%
|
XP_018981983.1 mannosyl-oligosaccharide 1,2-alpha-mannosidase IA-like |
GO:0005975P:carbohydrate metabolic process GO:0004571F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity GO:0005509F:calcium ion binding GO:0000139C:Golgi membrane GO:0005783C:endoplasmic reticulum GO:0070062C:extracellular exosome |
Metabolism
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SRR941867_primary_scf7180002206833_1-490
Len: 489 bp
Hits: 20
E-val: 1.80E-15
Sim: 93.65%
|
RXN19630.1glutaminase liver mitochondrial-like isoform X1 |
GO:0006537P:glutamate biosynthetic process GO:0006543P:L-glutamine catabolic process GO:0004359F:glutaminase activity GO:0016020C:membrane |
Other
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SRR941867_primary_scf7180002206861_599-841
Len: 242 bp
Hits: 20
E-val: 1.00E-27
Sim: 94.77%
|
RXN08242.1cytochrome P450 2B4-like isoform X1 |
GO:0006082P:organic acid metabolic process GO:0006805P:xenobiotic metabolic process GO:0005506F:iron ion binding GO:0016712F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen GO:0020037F:heme binding GO:0005737C:cytoplasm GO:0016020C:membrane GO:0043231C:intracellular membrane-bounded organelle |
Metabolism
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SRR941867_primary_scf7180002207019_206-960
Len: 754 bp
Hits: 20
E-val: 7.60E-13
Sim: 97.83%
|
XP_016352988.1 exosome component 10-like |
GO:0000467P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0071035P:nuclear polyadenylation-dependent rRNA catabolic process GO:0071036P:nuclear polyadenylation-dependent snoRNA catabolic process GO:0071037P:nuclear polyadenylation-dependent snRNA catabolic process GO:0071038P:TRAMP-dependent tRNA surveillance pathway GO:0071039P:nuclear polyadenylation-dependent CUT catabolic process GO:0071040P:nuclear polyadenylation-dependent antisense transcript catabolic process GO:0071044P:histone mRNA catabolic process GO:0071051P:poly(A)-dependent snoRNA 3'-end processing GO:0000166F:nucleotide binding GO:0000175F:3'-5'-RNA exonuclease activity GO:0003727F:single-stranded RNA binding GO:0000176C:nuclear exosome (RNase complex) GO:0005730C:nucleolus |
DNA Metabolism
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SRR941867_primary_scf7180002207453_1-547
Len: 546 bp
Hits: 20
E-val: 9.60E-18
Sim: 100%
|
NP_997766.1survival of motor neuron-related-splicing factor 30 |
GO:0000381P:regulation of alternative mRNA splicing, via spliceosome GO:0003723F:RNA binding GO:0005737C:cytoplasm GO:0015030C:Cajal body GO:0016607C:nuclear speck GO:0071011C:precatalytic spliceosome |
Other
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SRR941867_primary_scf7180002207485_1-1382
Len: 1,381 bp
Hits: 20
E-val: 3.90E-39
Sim: 96.31%
|
RXN35349.1ephrin type-B receptor 3-like protein |
GO:0007173P:epidermal growth factor receptor signaling pathway GO:0007411P:axon guidance GO:0007413P:axonal fasciculation GO:0008286P:insulin receptor signaling pathway GO:0008543P:fibroblast growth factor receptor signaling pathway GO:0016477P:cell migration GO:0022407P:regulation of cell-cell adhesion GO:0031547P:brain-derived neurotrophic factor receptor signaling pathway GO:0034446P:substrate adhesion-dependent cell spreading GO:0035790P:platelet-derived growth factor receptor-alpha signaling pathway GO:0035791P:platelet-derived growth factor receptor-beta signaling pathway GO:0036323P:vascular endothelial growth factor receptor-1 signaling pathway GO:0038063P:collagen-activated tyrosine kinase receptor signaling pathway GO:0038084P:vascular endothelial growth factor signaling pathway GO:0038109P:Kit signaling pathway GO:0038145P:macrophage colony-stimulating factor signaling pathway GO:0043087P:regulation of GTPase activity GO:0046777P:protein autophosphorylation GO:0048009P:insulin-like growth factor receptor signaling pathway GO:0048012P:hepatocyte growth factor receptor signaling pathway GO:0048013P:ephrin receptor signaling pathway GO:0050770P:regulation of axonogenesis GO:0051965P:positive regulation of synapse assembly GO:0060997P:dendritic spine morphogenesis GO:0005004F:GPI-linked ephrin receptor activity GO:0005005F:transmembrane-ephrin receptor activity GO:0005006F:epidermal growth factor receptor activity GO:0005007F:fibroblast growth factor receptor activity GO:0005008F:hepatocyte growth factor receptor activity GO:0005009F:insulin receptor activity GO:0005010F:insulin-like growth factor receptor activity GO:0005011F:macrophage colony-stimulating factor receptor activity GO:0005018F:platelet-derived growth factor alpha-receptor activity GO:0005019F:platelet-derived growth factor beta-receptor activity GO:0005020F:stem cell factor receptor activity GO:0005021F:vascular endothelial growth factor receptor activity GO:0005524F:ATP binding GO:0008288F:boss receptor activity GO:0036332F:placental growth factor receptor activity GO:0038062F:protein tyrosine kinase collagen receptor activity GO:0060175F:brain-derived neurotrophic factor receptor activity GO:0005886C:plasma membrane GO:0030425C:dendrite GO:0043235C:receptor complex |
Signal Transduction
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SRR941867_primary_scf7180002207494_1-1214
Len: 1,213 bp
Hits: 20
E-val: 4.70E-33
Sim: 91.44%
|
CAG05238.1unnamed protein product, partial |
GO:0003723F:RNA binding GO:0005654C:nucleoplasm |
Other
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SRR941867_primary_scf7180002207848_1-1349
Len: 1,348 bp
Hits: 20
E-val: 1.40E-17
Sim: 94.34%
|
XP_026132551.1trinucleotide repeat-containing gene 6B protein-like |
GO:0006417P:regulation of translation GO:0035195P:miRNA-mediated post-transcriptional gene silencing GO:0060213P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening GO:0003723F:RNA binding GO:0000932C:P-body GO:0005654C:nucleoplasm GO:0005829C:cytosol |
Transcription Regulation
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SRR941867_primary_scf7180002207874_1-1386
Len: 1,385 bp
Hits: 20
E-val: 1.20E-16
Sim: 97.7%
|
XP_026145425.1collagen alpha-2(XI) chain-like isoform X6 |
GO:0030198P:extracellular matrix organization GO:0060536P:cartilage morphogenesis GO:0030020F:extracellular matrix structural constituent conferring tensile strength GO:0005581C:collagen trimer GO:0005615C:extracellular space GO:0031012C:extracellular matrix |
Other
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SRR941867_primary_scf7180002207951_1-1009
Len: 1,008 bp
Hits: 20
E-val: 4.80E-47
Sim: 89.17%
|
XP_018936017.1 mast/stem cell growth factor receptor kita-like |
GO:0002244P:hematopoietic progenitor cell differentiation GO:0007173P:epidermal growth factor receptor signaling pathway GO:0008284P:positive regulation of cell population proliferation GO:0008286P:insulin receptor signaling pathway GO:0008543P:fibroblast growth factor receptor signaling pathway GO:0030183P:B cell differentiation GO:0030335P:positive regulation of cell migration GO:0031547P:brain-derived neurotrophic factor receptor signaling pathway GO:0035162P:embryonic hemopoiesis GO:0035790P:platelet-derived growth factor receptor-alpha signaling pathway GO:0035791P:platelet-derived growth factor receptor-beta signaling pathway GO:0036323P:vascular endothelial growth factor receptor-1 signaling pathway GO:0038063P:collagen-activated tyrosine kinase receptor signaling pathway GO:0038084P:vascular endothelial growth factor signaling pathway GO:0038093P:Fc receptor signaling pathway GO:0038109P:Kit signaling pathway GO:0038145P:macrophage colony-stimulating factor signaling pathway GO:0046427P:positive regulation of receptor signaling pathway via JAK-STAT GO:0048009P:insulin-like growth factor receptor signaling pathway GO:0048012P:hepatocyte growth factor receptor signaling pathway GO:0048013P:ephrin receptor signaling pathway GO:0005004F:GPI-linked ephrin receptor activity GO:0005005F:transmembrane-ephrin receptor activity GO:0005006F:epidermal growth factor receptor activity GO:0005007F:fibroblast growth factor receptor activity GO:0005008F:hepatocyte growth factor receptor activity GO:0005009F:insulin receptor activity GO:0005010F:insulin-like growth factor receptor activity GO:0005011F:macrophage colony-stimulating factor receptor activity GO:0005018F:platelet-derived growth factor alpha-receptor activity GO:0005019F:platelet-derived growth factor beta-receptor activity GO:0005020F:stem cell factor receptor activity GO:0005021F:vascular endothelial growth factor receptor activity GO:0005524F:ATP binding GO:0008288F:boss receptor activity GO:0019838F:growth factor binding GO:0019955F:cytokine binding GO:0036332F:placental growth factor receptor activity GO:0038062F:protein tyrosine kinase collagen receptor activity GO:0046872F:metal ion binding GO:0060175F:brain-derived neurotrophic factor receptor activity GO:0005886C:plasma membrane GO:0012505C:endomembrane system GO:0043235C:receptor complex |
Signal Transduction
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SRR941867_primary_scf7180002207982_1-864
Len: 863 bp
Hits: 20
E-val: 6.00E-14
Sim: 100%
|
XP_026049846.1utrophin isoform X5 |
GO:0099536P:synaptic signaling GO:0003779F:actin binding GO:0008270F:zinc ion binding GO:0005737C:cytoplasm GO:0005856C:cytoskeleton GO:0045211C:postsynaptic membrane GO:0120025C:plasma membrane bounded cell projection |
Cell Signaling
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SRR941867_primary_scf7180002208087_1-876
Len: 875 bp
Hits: 20
E-val: 5.50E-23
Sim: 92.26%
|
XP_026067995.1potassium channel subfamily T member 1-like isoform X4 |
GO:0071805P:potassium ion transmembrane transport GO:0005228F:intracellular sodium-activated potassium channel activity GO:0015271F:outward rectifier potassium channel activity GO:0005886C:plasma membrane |
Ion Transport
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SRR941867_primary_scf7180002208251_392-1047
Len: 655 bp
Hits: 20
E-val: 2.80E-16
Sim: 96.08%
|
AAH83414.1Transmembrane BAX inhibitor motif containing 1 |
GO:0043524P:negative regulation of neuron apoptotic process GO:0070588P:calcium ion transmembrane transport GO:1902042P:negative regulation of extrinsic apoptotic signaling pathway via death domain receptors GO:0005262F:calcium channel activity GO:0005783C:endoplasmic reticulum GO:0005794C:Golgi apparatus GO:0016020C:membrane |
Cell Signaling
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SRR941867_primary_scf7180002208565_1-1342
Len: 1,341 bp
Hits: 13
E-val: 1.10E-06
Sim: 87.71%
|
XP_010765008.1 ankyrin-1-like |
Other
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SRR941867_primary_scf7180002208625_1-1012
Len: 1,011 bp
Hits: 20
E-val: 1.60E-18
Sim: 91.76%
|
XP_016111932.1 leucine-rich repeat and calponin homology domain-containing protein 4-like |
GO:0005737C:cytoplasm GO:0016020C:membrane |
Other
|
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SRR941867_primary_scf7180002209000_1-789
Len: 788 bp
Hits: 20
E-val: 1.20E-48
Sim: 69.56%
|
XP_016422269.1 X-linked retinitis pigmentosa GTPase regulator-like |
GO:0010842P:retina layer formation GO:0046548P:retinal rod cell development GO:0060271P:cilium assembly GO:0060287P:epithelial cilium movement involved in determination of left/right asymmetry |
Other
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SRR941867_primary_scf7180002209160_710-1082
Len: 372 bp
Hits: 20
E-val: 4.40E-30
Sim: 93.01%
|
XP_018930978.1 short stature homeobox protein 2 isoform X1 |
GO:0006357P:regulation of transcription by RNA polymerase II GO:0007507P:heart development GO:0008016P:regulation of heart contraction GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:1990837F:sequence-specific double-stranded DNA binding GO:0005634C:nucleus |
Transcription Regulation
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SRR941867_primary_scf7180002209228_1-1215
Len: 1,214 bp
Hits: 20
E-val: 4.00E-64
Sim: 61.76%
|
XP_016120100.1 cleft lip and palate transmembrane protein 1 homolog |
GO:0030154P:cell differentiation GO:0003674F:molecular_function GO:0012505C:endomembrane system GO:0016020C:membrane |
Other
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SRR941867_primary_scf7180002210347_839-1175
Len: 336 bp
Hits: 20
E-val: 4.70E-15
Sim: 99.58%
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XP_016401770.1 4-hydroxyphenylpyruvate dioxygenase |
GO:0006572P:L-tyrosine catabolic process GO:0003868F:4-hydroxyphenylpyruvate dioxygenase activity GO:0004462F:lactoylglutathione lyase activity GO:0046872F:metal ion binding GO:0000139C:Golgi membrane GO:0005789C:endoplasmic reticulum membrane |
Other
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SRR941867_primary_scf7180002210371_1-1206
Len: 1,205 bp
Hits: 20
E-val: 3.90E-19
Sim: 99.58%
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XP_026051405.1leucine--tRNA ligase, cytoplasmic-like |
GO:0006429P:leucyl-tRNA aminoacylation GO:0106074P:aminoacyl-tRNA metabolism involved in translational fidelity GO:0002161F:aminoacyl-tRNA deacylase activity GO:0004823F:leucine-tRNA ligase activity GO:0005524F:ATP binding |
DNA Metabolism
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SRR941867_primary_scf7180002210468_1-1282
Len: 1,281 bp
Hits: 20
E-val: 1.10E-24
Sim: 96.05%
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XP_026096783.1protein 4.1-like isoform X7 |
GO:0030866P:cortical actin cytoskeleton organization GO:0031032P:actomyosin structure organization GO:0051301P:cell division GO:0003779F:actin binding GO:0005198F:structural molecule activity GO:0005516F:calmodulin binding GO:0005634C:nucleus GO:0005856C:cytoskeleton GO:0005886C:plasma membrane GO:0005938C:cell cortex |
Other
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SRR941867_primary_scf7180002210480_1-840
Len: 839 bp
Hits: 20
E-val: 8.10E-32
Sim: 94.03%
|
XP_018963683.1 twinfilin-2-like |
GO:0010591P:regulation of lamellipodium assembly GO:0010976P:positive regulation of neuron projection development GO:0051016P:barbed-end actin filament capping GO:0003785F:actin monomer binding GO:0051015F:actin filament binding GO:0005884C:actin filament GO:0030016C:myofibril GO:0048471C:perinuclear region of cytoplasm |
Other
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SRR941867_primary_scf7180002210573_1-530
Len: 529 bp
Hits: 20
E-val: 2.70E-25
Sim: 100%
|
XP_026055641.1endophilin-A1-like |
GO:0016191P:synaptic vesicle uncoating GO:0008289F:lipid binding GO:0002102C:podosome GO:0031901C:early endosome membrane GO:0042995C:cell projection GO:0070161C:anchoring junction GO:0098793C:presynapse GO:0098978C:glutamatergic synapse |
Other
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SRR941867_primary_scf7180002210611_1-804
Len: 803 bp
Hits: 20
E-val: 9.40E-54
Sim: 65.14%
|
XP_026063864.1potassium voltage-gated channel subfamily H member 4-like |
GO:0006813P:potassium ion transport GO:0055085P:transmembrane transport GO:0005267F:potassium channel activity GO:0016020C:membrane |
Ion Transport
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