Functional and statistical data for significant genes
| Sequence & Stats | Description | GO Annotations | Gene Function |
|---|---|---|---|
|
SRR924327_primary_scf7180002487538_177-816
Len: 639 bp
Hits: 20
E-val: 3.40E-22
Sim: 54.44%
|
XP_016390643.1 presenilins-associated rhomboid-like protein, mitochondrial |
GO:0006465P:signal peptide processing GO:0004252F:serine-type endopeptidase activity GO:0016787F:hydrolase activity GO:0005923C:bicellular tight junction GO:0016020C:membrane |
Protein Degradation
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SRR924327_primary_scf7180002487633_602-1448
Len: 846 bp
Hits: 20
E-val: 3.90E-26
Sim: 94.19%
|
XP_016370202.1 neuronal pentraxin receptor-like |
GO:0000122P:negative regulation of transcription by RNA polymerase II GO:0003682F:chromatin binding GO:0000785C:chromatin GO:0035102C:PRC1 complex |
Transcription Regulation
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SRR924327_primary_scf7180002487773_277-543
Len: 266 bp
Hits: 20
E-val: 1.50E-40
Sim: 80.02%
|
XP_018974560.1 LOW QUALITY PROTEIN: general transcription factor 3C polypeptide 6 |
GO:0006383P:transcription by RNA polymerase III GO:0000127C:transcription factor TFIIIC complex |
Transcription Regulation
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SRR924327_primary_scf7180002488090_1-807
Len: 806 bp
Hits: 20
E-val: 6.50E-71
Sim: 65.86%
|
XP_018975938.1 LOW QUALITY PROTEIN: protein GREB1-like |
Other
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|
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SRR924327_primary_scf7180002488893_53-622
Len: 569 bp
Hits: 20
E-val: 8.30E-97
Sim: 90.01%
|
XP_018967884.1 collagen alpha-1(VI) chain isoform X1 |
GO:0007155P:cell adhesion GO:0019441P:L-tryptophan catabolic process to kynurenine GO:0019442P:L-tryptophan catabolic process to acetyl-CoA GO:0004833F:L-tryptophan 2,3-dioxygenase activity GO:0020037F:heme binding GO:0046872F:metal ion binding GO:0005581C:collagen trimer GO:0005615C:extracellular space |
Other
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SRR924327_primary_scf7180002488988_1-1021
Len: 1,020 bp
Hits: 20
E-val: 3.60E-183
Sim: 89.57%
|
XP_018921546.1 LOW QUALITY PROTEIN: leucine-rich repeat-containing G-protein coupled receptor 6, partial |
GO:0007189P:adenylate cyclase-activating G protein-coupled receptor signaling pathway GO:0009755P:hormone-mediated signaling pathway GO:0008528F:G protein-coupled peptide receptor activity GO:0016500F:protein-hormone receptor activity GO:0005886C:plasma membrane |
Cell Signaling
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SRR924327_primary_scf7180002489023_1-1058
Len: 1,057 bp
Hits: 20
E-val: 1.00E-31
Sim: 93.84%
|
XP_018959490.1 multidrug resistance-associated protein 5-like |
GO:0055085P:transmembrane transport GO:0005524F:ATP binding GO:0016887F:ATP hydrolysis activity GO:0140359F:ABC-type transporter activity GO:0016020C:membrane |
Membrane Transport
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SRR924327_primary_scf7180002489222_138-751
Len: 613 bp
Hits: 20
E-val: 8.50E-23
Sim: 88.68%
|
XP_016122087.1 talin-1-like, partial |
GO:0030036P:actin cytoskeleton organization GO:0098609P:cell-cell adhesion GO:0005178F:integrin binding GO:0005200F:structural constituent of cytoskeleton GO:0051015F:actin filament binding GO:0001726C:ruffle GO:0005737C:cytoplasm GO:0005856C:cytoskeleton GO:0005886C:plasma membrane GO:0005925C:focal adhesion |
Other
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SRR924327_primary_scf7180002489519_1-878
Len: 877 bp
Hits: 20
E-val: 3.00E-29
Sim: 88.04%
|
XP_016141240.1 leucine-rich repeat and calponin homology domain-containing protein 3-like |
GO:0005829C:cytosol GO:0016020C:membrane |
Other
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SRR924327_primary_scf7180002489594_1-803
Len: 802 bp
Hits: 20
E-val: 1.10E-65
Sim: 64.59%
|
XP_016133518.1 ninein-like protein isoform X1 |
GO:0035845P:photoreceptor cell outer segment organization GO:0042462P:eye photoreceptor cell development GO:0036064C:ciliary basal body |
Cell Signaling
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SRR924327_primary_scf7180002489659_1-799
Len: 798 bp
Hits: 20
E-val: 1.70E-100
Sim: 95.18%
|
XP_018949715.1 neuropilin and tolloid-like protein 1 |
GO:0030150P:protein import into mitochondrial matrix GO:2000463P:positive regulation of excitatory postsynaptic potential GO:0035255F:ionotropic glutamate receptor binding GO:0005744C:TIM23 mitochondrial import inner membrane translocase complex GO:0014069C:postsynaptic density |
Cell Signaling
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SRR924327_primary_scf7180002489782_1-920
Len: 919 bp
Hits: 20
E-val: 2.60E-60
Sim: 86.1%
|
XP_018923334.1 cAMP-specific 3',5'-cyclic phosphodiesterase 4C-like isoform X1 |
GO:0006198P:cAMP catabolic process GO:0007165P:signal transduction GO:0004115F:3',5'-cyclic-AMP phosphodiesterase activity GO:0046872F:metal ion binding |
Other
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SRR924327_primary_scf7180002490166_1-1025
Len: 1,024 bp
Hits: 20
E-val: 2.10E-21
Sim: 83.06%
|
XP_023264363.1zinc finger E-box-binding homeobox 2-like isoform X1 |
GO:0000122P:negative regulation of transcription by RNA polymerase II GO:0001755P:neural crest cell migration GO:0001756P:somitogenesis GO:0001843P:neural tube closure GO:0001935P:endothelial cell proliferation GO:0010764P:negative regulation of fibroblast migration GO:0021540P:corpus callosum morphogenesis GO:0021766P:hippocampus development GO:0021846P:cell proliferation in forebrain GO:0021957P:corticospinal tract morphogenesis GO:0030511P:positive regulation of transforming growth factor beta receptor signaling pathway GO:0036446P:myofibroblast differentiation GO:0043149P:stress fiber assembly GO:0043542P:endothelial cell migration GO:0045636P:positive regulation of melanocyte differentiation GO:0045944P:positive regulation of transcription by RNA polymerase II GO:0048143P:astrocyte activation GO:0048668P:collateral sprouting GO:0050772P:positive regulation of axonogenesis GO:0061373P:mammillary axonal complex development GO:0070269P:pyroptotic inflammatory response GO:0072537P:fibroblast activation GO:0090263P:positive regulation of canonical Wnt signaling pathway GO:0090649P:response to oxygen-glucose deprivation GO:0097324P:melanocyte migration GO:1902748P:positive regulation of lens fiber cell differentiation GO:1903056P:regulation of melanosome organization GO:1904330P:positive regulation of myofibroblast contraction GO:1904520P:regulation of myofibroblast cell apoptotic process GO:1905603P:regulation of blood-brain barrier permeability GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0001227F:DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001228F:DNA-binding transcription activator activity, RNA polymerase II-specific GO:0008270F:zinc ion binding GO:0070412F:R-SMAD binding GO:0000785C:chromatin GO:0005634C:nucleus |
Cell Signaling
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SRR924327_primary_scf7180002490219_1-854
Len: 853 bp
Hits: 20
E-val: 1.80E-42
Sim: 57.24%
|
XP_018919740.1 LOW QUALITY PROTEIN: phosphatidylcholine:ceramide cholinephosphotransferase 2-like |
GO:0006665P:sphingolipid metabolic process GO:0016780F:phosphotransferase activity, for other substituted phosphate groups GO:0016020C:membrane |
Metabolism
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SRR924327_primary_scf7180002490518_1-855
Len: 854 bp
Hits: 20
E-val: 2.70E-35
Sim: 96.76%
|
XP_018982017.1 opsin-VA |
GO:0007186P:G protein-coupled receptor signaling pathway GO:0007601P:visual perception GO:0007602P:phototransduction GO:0009584P:detection of visible light GO:0071482P:cellular response to light stimulus GO:0008020F:G protein-coupled photoreceptor activity GO:0001750C:photoreceptor outer segment GO:0005886C:plasma membrane |
Cell Signaling
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SRR924327_primary_scf7180002490885_1-234
Len: 233 bp
Hits: 20
E-val: 1.40E-23
Sim: 86.07%
|
NP_001038590.1serine/threonine-protein kinase MRCK beta |
GO:0006338P:chromatin remodeling GO:0031032P:actomyosin structure organization GO:0004676F:3-phosphoinositide-dependent protein kinase activity GO:0004677F:DNA-dependent protein kinase activity GO:0004679F:AMP-activated protein kinase activity GO:0004694F:eukaryotic translation initiation factor 2alpha kinase activity GO:0004711F:ribosomal protein S6 kinase activity GO:0005524F:ATP binding GO:0008270F:zinc ion binding GO:0035175F:histone H3S10 kinase activity GO:0035402F:histone H3T11 kinase activity GO:0035403F:histone H3T6 kinase activity GO:0035979F:histone H2AXS139 kinase activity GO:0044022F:histone H3S28 kinase activity GO:0044023F:histone H4S1 kinase activity GO:0044024F:histone H2AS1 kinase activity GO:0044025F:histone H2BS14 kinase activity GO:0072354F:histone H3T3 kinase activity GO:0072518F:Rho-dependent protein serine/threonine kinase activity GO:0140823F:histone H2BS36 kinase activity GO:0140855F:histone H3S57 kinase activity GO:0140857F:histone H3T45 kinase activity GO:1990244F:histone H2AT120 kinase activity GO:0005737C:cytoplasm GO:0005856C:cytoskeleton GO:0030027C:lamellipodium |
Signal Transduction
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SRR924327_primary_scf7180002490957_1-957
Len: 956 bp
Hits: 20
E-val: 1.60E-76
Sim: 91.38%
|
XP_016368225.1 dedicator of cytokinesis protein 3-like |
GO:0007264P:small GTPase-mediated signal transduction GO:0005085F:guanyl-nucleotide exchange factor activity GO:0031267F:small GTPase binding GO:0005737C:cytoplasm GO:0005886C:plasma membrane |
Other
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SRR924327_primary_scf7180002491466_534-1033
Len: 499 bp
Hits: 20
E-val: 1.60E-11
Sim: 95.19%
|
RXN05168.1ras GTPase-activating IQGAP3 |
GO:0048870P:cell motility GO:0060027P:convergent extension involved in gastrulation GO:1903479P:mitotic actomyosin contractile ring assembly actin filament organization GO:0005096F:GTPase activator activity GO:0005516F:calmodulin binding GO:0051015F:actin filament binding GO:0005938C:cell cortex GO:0120025C:plasma membrane bounded cell projection |
Other
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SRR924327_primary_scf7180002494163_302-839
Len: 537 bp
Hits: 20
E-val: 1.00E-16
Sim: 95.92%
|
XP_026097460.1protein-methionine sulfoxide oxidase mical2b-like isoform X2 |
GO:0003779F:actin binding GO:0046872F:metal ion binding GO:0071949F:FAD binding GO:0120501F:F-actin monooxygenase activity GO:0005634C:nucleus GO:0005737C:cytoplasm |
Other
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SRR924327_primary_scf7180002494732_1-468
Len: 467 bp
Hits: 20
E-val: 1.80E-20
Sim: 97.74%
|
ABX80007.1muscleblind-like protein 3D |
GO:0043484P:regulation of RNA splicing GO:0003723F:RNA binding GO:0008270F:zinc ion binding GO:0005654C:nucleoplasm GO:0005737C:cytoplasm |
Other
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SRR924327_primary_scf7180002495169_238-543
Len: 305 bp
Hits: 20
E-val: 7.70E-09
Sim: 94.59%
|
XP_026050800.1band 4.1-like protein 2 isoform X6 |
GO:0030866P:cortical actin cytoskeleton organization GO:0031032P:actomyosin structure organization GO:0003779F:actin binding GO:0005198F:structural molecule activity GO:0005856C:cytoskeleton GO:0005886C:plasma membrane |
Other
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SRR924327_primary_scf7180002496128_1-989
Len: 988 bp
Hits: 20
E-val: 2.40E-22
Sim: 83.42%
|
XP_026121805.1hepatocyte growth factor-like protein |
GO:0006313P:DNA transposition GO:0006508P:proteolysis GO:0006954P:inflammatory response GO:0015074P:DNA integration GO:0030282P:bone mineralization GO:0046425P:regulation of receptor signaling pathway via JAK-STAT GO:0003677F:DNA binding GO:0004252F:serine-type endopeptidase activity GO:0030971F:receptor tyrosine kinase binding GO:0005615C:extracellular space |
Signal Transduction
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SRR924327_primary_scf7180002496744_1-1076
Len: 1,075 bp
Hits: 20
E-val: 2.40E-68
Sim: 99.02%
|
XP_026135333.1glutamate receptor 3-like isoform X2 |
GO:0034220P:monoatomic ion transmembrane transport GO:0015276F:ligand-gated monoatomic ion channel activity GO:0038023F:signaling receptor activity GO:0045211C:postsynaptic membrane |
Cell Signaling
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SRR924327_primary_scf7180002497244_430-899
Len: 469 bp
Hits: 20
E-val: 5.70E-35
Sim: 74.81%
|
KPP67567.1lens fiber membrane intrinsic protein-like |
GO:0005212F:structural constituent of eye lens GO:0005886C:plasma membrane |
Other
|
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SRR924327_primary_scf7180002498558_1-1191
Len: 1,190 bp
Hits: 20
E-val: 1.60E-17
Sim: 85.15%
|
XP_018918332.1 plexin A3-like |
GO:0003205P:cardiac chamber development GO:0007416P:synapse assembly GO:0008045P:motor neuron axon guidance GO:0030334P:regulation of cell migration GO:0048675P:axon extension GO:0048696P:regulation of collateral sprouting in absence of injury GO:0048755P:branching morphogenesis of a nerve GO:0060272P:embryonic skeletal joint morphogenesis GO:0071526P:semaphorin-plexin signaling pathway GO:0017154F:semaphorin receptor activity GO:0042802F:identical protein binding GO:0002116C:semaphorin receptor complex GO:0005886C:plasma membrane |
Cell Signaling
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